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add sv2a pet atlas from NRU to examples #552

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6cb547b
add sv2a atlas from NRU to examples
bendhouseart Apr 15, 2026
5b02e42
added SkullStripped
bendhouseart Apr 16, 2026
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1 change: 1 addition & 0 deletions atlas-sv2a/.bidsignore
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atlas-NRUSV2A2024_desc-regionalvalues.tsv
51 changes: 51 additions & 0 deletions atlas-sv2a/atlas-NRUSV2A2024_desc-regionalvalues.tsv
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region Vt.mean Vt.sd Bmax.mean Bmax.sd
accumbens.area 19.4258151991962 2.85512637360944 598.420816448135 107.661339416428
amygdala 16.07065808196 2.23911677180981 471.90427674851 84.4327988389796
bankssts 20.2977431619254 2.36833163611333 631.299547564821 89.3052435377557
caudalanteriorcingulate 17.5174813320037 2.36160792528297 526.461206500666 89.0517052984202
caudalmiddlefrontal 18.5195856504875 2.22425542818111 564.248638314607 83.8724060747984
caudate 17.8583646255139 2.15447585325547 539.315261684779 81.2411521415773
cerebellum.cortex 12.6035539975378 1.46699794563979 341.166431630584 55.3176788280168
cuneus 18.7269113569421 2.25399366086763 572.066493054303 84.9937777914769
entorhinal 16.5745368879213 2.70192455536405 490.90458008176 101.884392691481
frontal.cortex 18.6506416139698 2.20692357614855 569.190507332187 83.2188551771427
frontalpole 18.6663216462181 2.66257570155525 569.781771273968 100.400622885453
fusiform 18.8682292198663 2.4139304950573 577.395318617515 91.0246890499212
hippocampus 12.8285160181725 1.69267922920384 349.649317951563 63.8276871745154
inferiorparietal 19.4198693046626 2.22360175095547 598.196608169502 83.8477571603725
inferiortemporal 19.3102109461929 2.5925242040285 594.061601796338 97.7591152724915
insula 18.5698533481906 2.15508350621887 566.144136781544 81.2640655693486
insular.cortex 18.5722174907285 2.15569706293987 566.233284062224 81.2872016164959
isthmuscingulate 16.3983179559081 2.05755817201385 484.259702143453 77.5865722700683
lateraloccipital 17.3549428128519 2.15338441503707 520.33219069233 81.19999609974
lateralorbitofrontal 18.5254053254637 2.31771713752386 564.468087095821 87.3966678745551
lingual 18.3984204603919 2.18116152437576 559.679731390936 82.2474176164063
medialorbitofrontal 18.3865505486824 2.2872000762133 559.232139786861 86.2459280242575
middletemporal 20.03878231668 2.37767009948325 621.534630777519 89.6573790802624
occipital.cortex 18.0237257378626 2.16704175323234 545.550712068832 81.7149881283089
pallidum 11.621611244195 1.37743802488311 304.139253768226 51.9405459922105
paracentral 17.7308213914338 2.22560900627587 534.505850955539 83.9234469085889
parahippocampal 17.9006355144517 2.60497842192423 540.909215831056 98.2287399421493
parietal.cortex 18.860357280734 2.25499914742783 577.098482891214 85.0316927611386
parsopercularis 20.1369514083647 2.46065457441759 625.236398936633 92.7865644658137
parsorbitalis 18.8810345347665 2.33527092382081 577.878182481809 88.058587487651
parstriangularis 19.2997608266113 2.2660502246812 593.667547830248 85.4484076883973
pericalcarine 18.7732393576307 2.31754955753291 573.813433103166 87.3903487545148
pons 6.06984427509243 0.785513776712791 94.7927696524158 29.6202179044156
postcentral 17.4480015684025 2.12606906383857 523.841257877451 80.1699865968879
posteriorcingulate 18.858166425309 2.35607187720867 577.015869935198 88.8429515436783
precentral 18.0737878631321 2.11586473908702 547.43845879359 79.7852010824019
precuneus 19.882694028082 2.33415935807941 615.648840791827 88.0166724755257
putamen 19.5751349090271 2.33450980748347 604.051376310658 88.0298872503908
rostralanteriorcingulate 18.5315950594534 2.27895836121268 564.701490092665 85.9351487591935
rostralmiddlefrontal 18.9430313302344 2.28898227404528 580.215962729048 86.3131312862459
superiorfrontal 18.6490554099811 2.23449870341626 569.13069462211 84.258660337314
superiorparietal 17.9336437693127 2.23814541240046 542.153893812031 84.3961707387204
superiortemporal 19.6269995343782 2.35231027493311 606.007091856293 88.7011087366202
supramarginal 19.8253633013893 2.44453963135385 613.487009048578 92.1789008713409
temporal.cortex 19.3476086965355 2.41314993714181 595.471799232872 90.9952557080383
temporalpole 17.5839394625421 2.77136427535193 528.967215136573 104.502831346841
thalamus 12.8885869535919 1.44969120869231 351.914477710173 54.6650749720485
transversetemporal 19.4787409786029 2.26188619400783 600.416546077918 85.2913900783152
ventraldc 8.06485539265763 0.987635675280807 170.020812464476 37.241847029614
white.matter 3.87145621278766 0.504062839249118 11.8957723312067 19.0072428755585
24 changes: 24 additions & 0 deletions atlas-sv2a/atlas-NRUSV2A2024_description.json
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{
"Name": "NRU SV2A Atlas",
"License": "CC-BY-NC-SA-4.0",
"Description": "In vivo high-resolution human synaptic density atlas (SV2A). Converted from the NRU SV2A atlas distribution into a BIDS-style atlas derivatives layout.",
"Authors": [
"Annette Johansen",
"Vincent Beliveau",
"Emil Colliander",
"Nakul Ravi Raval",
"Vibeke H\u00f8yrup Dam",
"Nic Gillings",
"Susana Aznar",
"Claus Svarer",

Check failure on line 13 in atlas-sv2a/atlas-NRUSV2A2024_description.json

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Claus ==> Clause
"Pontus Plav\u00e9n-Sigray",
"Gitte Moos Knudsen"
],
"ReferencesAndLinks": [
"https://xtra.nru.dk/SV2A-atlas/",
"https://doi.org/10.1523/JNEUROSCI.1750-23.2024"
],
"Species": "Homo sapiens",
"DerivedFrom": "PET",
"LevelType": "group"
}
13 changes: 13 additions & 0 deletions atlas-sv2a/dataset_description.json
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{
"Name": "NRU SV2A atlas converted to BIDS derivatives",
"BIDSVersion": "1.11.1",
"DatasetType": "derivative",
"License": "CC-BY-NC-SA-4.0",
"GeneratedBy": [
{
"Name": "convertNRUatlasses.py",
"Version": "1.0.0",
"Description": "Downloads NRU SV2A atlas and renames files to BIDS atlas-derivatives style"
}
]
}
7 changes: 7 additions & 0 deletions atlas-sv2a/tpl-MNI152/pet/tpl-MNI152_atlas-NRUSV2A2024_desc-BmaxCOV_pet.json
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{
"Atlas": "NRUSV2A2024",
"Units": "pmol/mL",
"Source": "NRU SV2A atlas",
"SpatialReference": "MNI152 (as distributed by source atlas)",
"SkullStripped": true
}
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7 changes: 7 additions & 0 deletions atlas-sv2a/tpl-MNI152/pet/tpl-MNI152_atlas-NRUSV2A2024_desc-BmaxMean_pet.json
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{
"Atlas": "NRUSV2A2024",
"Units": "pmol/mL",
"Source": "NRU SV2A atlas",
"SpatialReference": "MNI152 (as distributed by source atlas)",
"SkullStripped": true
}
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7 changes: 7 additions & 0 deletions atlas-sv2a/tpl-MNI152/pet/tpl-MNI152_atlas-NRUSV2A2024_desc-BmaxSD_pet.json
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{
"Atlas": "NRUSV2A2024",
"Units": "pmol/mL",
"Source": "NRU SV2A atlas",
"SpatialReference": "MNI152 (as distributed by source atlas)",
"SkullStripped": true
}
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7 changes: 7 additions & 0 deletions atlas-sv2a/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_atlas-NRUSV2A2024_desc-BmaxCOV_pet.json
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{
"Atlas": "NRUSV2A2024",
"Units": "pmol/mL",
"Source": "NRU SV2A atlas",
"SpatialReference": "fsaverage",
"SkullStripped": true
}
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7 changes: 7 additions & 0 deletions atlas-sv2a/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_atlas-NRUSV2A2024_desc-BmaxMean_pet.json
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{
"Atlas": "NRUSV2A2024",
"Units": "pmol/mL",
"Source": "NRU SV2A atlas",
"SpatialReference": "fsaverage",
"SkullStripped": true
}
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7 changes: 7 additions & 0 deletions atlas-sv2a/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_atlas-NRUSV2A2024_desc-BmaxSD_pet.json
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{
"Atlas": "NRUSV2A2024",
"Units": "pmol/mL",
"Source": "NRU SV2A atlas",
"SpatialReference": "fsaverage",
"SkullStripped": true
}
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7 changes: 7 additions & 0 deletions atlas-sv2a/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_atlas-NRUSV2A2024_desc-BmaxCOV_pet.json
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{
"Atlas": "NRUSV2A2024",
"Units": "pmol/mL",
"Source": "NRU SV2A atlas",
"SpatialReference": "fsaverage",
"SkullStripped": true
}
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7 changes: 7 additions & 0 deletions atlas-sv2a/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_atlas-NRUSV2A2024_desc-BmaxMean_pet.json
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{
"Atlas": "NRUSV2A2024",
"Units": "pmol/mL",
"Source": "NRU SV2A atlas",
"SpatialReference": "fsaverage",
"SkullStripped": true
}
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7 changes: 7 additions & 0 deletions atlas-sv2a/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_atlas-NRUSV2A2024_desc-BmaxSD_pet.json
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{
"Atlas": "NRUSV2A2024",
"Units": "pmol/mL",
"Source": "NRU SV2A atlas",
"SpatialReference": "fsaverage",
"SkullStripped": true
}
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