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Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE

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Add tests for genotype imputation #2815

Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
24d7a49
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Codecov / codecov/project failed Apr 6, 2026 in 1s

76.97% (-12.82%) compared to 8b1be4f

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76.97% (-12.82%) compared to 8b1be4f

Details

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 76.97%. Comparing base (8b1be4f) to head (24d7a49).
⚠️ Report is 412 commits behind head on main.

❗ There is a different number of reports uploaded between BASE (8b1be4f) and HEAD (24d7a49). Click for more details.

HEAD has 9 uploads less than BASE
Flag BASE (8b1be4f) HEAD (24d7a49)
python-tests 9 0
Additional details and impacted files
@@             Coverage Diff             @@
##             main    #2815       +/-   ##
===========================================
- Coverage   89.79%   76.97%   -12.82%     
===========================================
  Files          30       30               
  Lines       30399    30399               
  Branches     5909     5643      -266     
===========================================
- Hits        27296    23400     -3896     
- Misses       1778     5614     +3836     
- Partials     1325     1385       +60     
Components Coverage Δ
Python API 46.80% <ø> (-52.25%) ⬇️
Python C interface 87.94% <ø> (ø)
C library 86.21% <ø> (ø)
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