WALT-v1.01

• fix a multi-thread bug

WALT-v1.00

First Release Version v1.00

Pre-release

• fix small bugs
• add FAQ file
• change the minimum read length requirement to 36 (seed pattern 3)

_Note:_ If you download the latest version of WALT, before running walt command, please do make your new index, since the minimum read length requirement has changed. This affects both makedb and walt commands.

Pre-release

• add paired-end fragment length distribution in the output stats file
• change default -N option to 1,000,000 and paired-end mapping only keep the top-k candidates. Now paired-end mapping takes about 18 Gb memory

Pre-release

• Fix a bug in seed pattern 5 and 7
• seed pattern 5 and 7 have similar speed and accuracy as seed pattern 3
• seed pattern 7 supports minimal read length 21

Pre-release 1.0

Merge pull request #11 from acgtun/master

update copyrights and format

Pre-release

In MR format, for both single-end and paired-end mapping, matched strand for reads from mate 2 file are reversed in the output file.

• + ---> -
• - ---> +

Pre-release

In MR format, for both single-end and paired-end mapping, reads from mate 2 file are reverse-complemented in the output file.

Pre-release

Compared to WALT 0.0, this version supports SAM output format and trimming adaptor sequence.

This is a stable and tested version.

If you want to know the algorithm, implementation, and results, please refer to Reports.