Seqera Studio Jupyter

This repository contains the definition of Seqera Studio Jupyter. The main branch contains the latest supported version of Jupyter with connect-client. To use an older version of any component, check the existing tags using the pattern: jupyter/<version>/connect/<version>.

Components

• JupyterLab 4.6.0 — browser-based interactive notebook environment
• Python 3.13 — via micromamba/conda-forge
• Data science libraries — pandas, polars, scikit-learn, statsmodels, seaborn, plotly, altair, r-ggplot2, ipywidgets, itables
• Jupyter extensions — jupyterlab-git, jupytext, jupyter-collaboration, jupyterlab_code_formatter
• connect-client — Seqera connect client for studio integration

Repository Structure

.seqera/ contains:

• studio-config.yaml — references the pre-built image; studios using this branch will not require a build step
• Dockerfile — shows how the image was built; fork this repository and modify it to create a custom image
• env.yaml — conda environment specification (Python 3.13 and all dependencies)
• _start_jupyter.sh — startup script that launches JupyterLab
• seqera_identity_provider.py — JupyterLab identity provider configuration

Customization

To create a customized version:

1. Fork this repository
2. Modify the Dockerfile and/or env.yaml to add your tools or dependencies
3. Build and push your custom image
4. Update studio-config.yaml to reference your custom image

Pre-built Image

The pre-built image is available at:

public.cr.seqera.io/platform/data-studio-jupyter:4.6.0-0.13.0