These algorithms were developed and used for the writing of the paper:
Neguembor MV*, Arcon JP*, Buitrago D*, Lema R, Walther J, Garate X, Martin L, Romero P, AlHaj Abed J, Gut M, Blanc J, Lakadamyali M, Wu C-t, Brun Heath I, Orozco M, Dans PD, Cosma MP. MiOS, an integrated imaging and computational strategy to model gene folding with nucleosome resolution. Nature Struct Mol Biol. 2022.
The repository contains the algorithms used to fit and manipulate structures at two different resolutions (chromosome and base pair). For more information, the reader is referred to the paper.