Skip to content

@MPI-Dortmund Max Planck Institute of Molecular Physiology

Change the repository type filter

All

    Repositories list

    23 repositories

    • MontageMaker

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jul 14, 2026Jul 14, 2026

    • FLIM_Thermometry

      Public
      Robust thermometry-imaging at sub-micrometer and millisecond-resolution by fluorescence lifetime microscopy allows for additional acquisition of multiple imagin…
      MATLAB
      •0•0•0•0•Updated Jul 8, 2026Jul 8, 2026

    • cryolo

      Public
      cryolo documentation
      Python
      •2•13•8•1•Updated Mar 5, 2026Mar 5, 2026

    • napari-tomotwin

      Public
      Tool for the work with TomoTwin
      Python
      •
      Mozilla Public License 2.0
      •0•5•1•1•Updated Jan 29, 2026Jan 29, 2026

    • napari-boxmanager

      Public
      Python
      •
      Mozilla Public License 2.0
      •0•3•12•0•Updated Jan 29, 2026Jan 29, 2026

    • tomotwin-cryoet

      Public
      cryo-ET particle picking by representation and metric learning
      deep-learningmetric-learningcryo-em
      deep-learningmetric-learningcryo-emcryo-etparticle-picking
      Python
      •
      Mozilla Public License 2.0
      •10•46•10•1•Updated Nov 24, 2025Nov 24, 2025

    • ALSTracker

      Public
      Bayesian ALS Tracking and Phase Evaluation
      bayesian-statisticshealthcare-applicationamyotrophic-lateral-sclerosis
      bayesian-statisticshealthcare-applicationamyotrophic-lateral-sclerosis
      HTML
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • transphire

      Public
      Transphire: Cryo-EM on the fly processing pipeline
      cryo-em
      cryo-em
      Python
      •
      GNU General Public License v3.0
      •2•9•0•0•Updated Jan 9, 2025Jan 9, 2025

    • tem-simulator-scripts

      Public
      Scripts to simulation of Tomograms with the TEM Simulator easy.
      Python
      •
      Mozilla Public License 2.0
      •2•13•4•1•Updated Dec 18, 2024Dec 18, 2024

    • sphire-janni

      Public
      Just another noise 2 noise implementation (JANNI) with Keras
      deep-learningkerasnoise2noise
      deep-learningkerasnoise2noisesphire
      Jupyter Notebook
      •
      Other
      •2•3•0•3•Updated Aug 2, 2024Aug 2, 2024

    • sphire_classes_autoselect

      Public
      Simple binary classification tool for cryo-EM and cryo-ET
      Python
      •
      MIT License
      •0•5•0•2•Updated Aug 2, 2024Aug 2, 2024

    • cryodrgn

      Public
      Neural networks for cryo-EM reconstruction
      Python
      •
      GNU General Public License v3.0
      •92•0•0•0•Updated May 7, 2024May 7, 2024

    • pyStarDB

      Public
      Star file python package
      Python
      •
      MIT License
      •0•0•1•0•Updated Apr 3, 2024Apr 3, 2024

    • facility-autobadge

      Public
      facility-autobadge creates a traffic light system for facility devices on your gitlab repo startpage. The traffic light system gets automatically updated based …
      microscopyfacility-management
      microscopyfacility-management
      Python
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Feb 15, 2024Feb 15, 2024

    • pymissense

      Public
      PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
      deep-learningstructural-biologyprotein-structure
      deep-learningstructural-biologyprotein-structureprotein-sequencesuniprotprotein-structure-prediction
      Python
      •
      Mozilla Public License 2.0
      •1•24•3•0•Updated Oct 13, 2023Oct 13, 2023

    • LineEnhancer

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Aug 21, 2023Aug 21, 2023

    • transphire_transform

      Public
      Utilites to change between SPHIRE, RELION and to modify the data
      Python
      •
      MIT License
      •0•3•0•5•Updated Dec 8, 2022Dec 8, 2022

    • pyem

      Public
      Python programs for electron microscopy
      Python
      •
      GNU General Public License v3.0
      •56•0•0•0•Updated Dec 5, 2022Dec 5, 2022

    • IsoNet

      Public
      Python
      •
      MIT License
      •16•0•0•0•Updated Nov 7, 2022Nov 7, 2022

    • StarGUI

      Public
      Making star file manipulation easy with Pandas and a GUI
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 6, 2022Jul 6, 2022

    • ij_striper

      Public
      Java
      •0•0•0•2•Updated Apr 26, 2021Apr 26, 2021

    • sphire_tutorial

      Public
      Tutorial for the SPHIRE software suite
      TeX
      •0•0•0•0•Updated Sep 23, 2020Sep 23, 2020

    • striper

      Public
      Python
      •0•0•0•0•Updated Feb 18, 2020Feb 18, 2020
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.