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@MHH-RCUG Research Core Unit Genomics at Hannover Medical School

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    13 repositories

    • nf_wochenende

      Public
      A nextflow version of the Wochenende reference metagenome binning and visualization pipeline
      Python
      •
      MIT License
      •2•16•16•0•Updated Mar 4, 2026Mar 4, 2026

    • sc-analysis

      Public
      UNDER DEVELOPMENT: Workflows for single-cell RNA-seq analysis
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 8, 2025Oct 8, 2025

    • Heatmaps

      Public
      Heatmap script to compare taxon abundance using output from the Wochenende pipeline
      bioinformaticsseabornheatmaps
      bioinformaticsseabornheatmaps
      Python
      •2•4•4•0•Updated Sep 4, 2024Sep 4, 2024

    • AlethieG

      Public
      AlethieG - A metagenomic analysis tool - Adopted for Wochenende
      Java
      •
      MIT License
      •1•0•0•0•Updated Aug 22, 2023Aug 22, 2023

    • WochenendeAlethieG

      Public
      Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
      Python
      •
      MIT License
      •16•0•0•0•Updated Dec 2, 2022Dec 2, 2022

    • scrnaseq

      Public
      UNDER DEVELOPMENT: Workflow for single-cell RNA-seq analysis using Seurat
      HTML
      •
      MIT License
      •20•0•0•0•Updated Sep 8, 2022Sep 8, 2022

    • nf_reporter

      Public
      Integrate metagenomic reports from our Wochenende metagenomics pipeline, raspir, growth rates and other tools using Nextflow
      bioinformaticsintegrationmetagenomics
      bioinformaticsintegrationmetagenomics
      Python
      •
      MIT License
      •0•2•10•0•Updated Aug 30, 2022Aug 30, 2022

    • haybaler

      Public
      Haybaler: Collate/integrate reporting CSV or bam.txt files from the Wochenende pipeline https://github.com/MHH-RCUG/Wochenende
      Python
      •
      MIT License
      •3•5•5•0•Updated Aug 30, 2022Aug 30, 2022

    • Wochenende

      Public
      Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
      bioinformaticsnanoporepipeline
      bioinformaticsnanoporepipelinegenomicsslurmmetagenomicsalignmentconda-environment
      Python
      •
      MIT License
      •16•37•23•0•Updated Aug 30, 2022Aug 30, 2022

    • scrnaseq_modular_extensions

      Public
      UNDER DEVELOPMENT: Workflows for modular extensions of single-cell RNA-seq analysis performed with the scrnaseq script https://github.com/ktrns/scrnaseq
      HTML
      •0•0•0•0•Updated Mar 11, 2022Mar 11, 2022

    • scrnaseq_app

      Public
      UNDER DEVELOPMENT: Shiny app for visualisation of scRNASeq data
      R
      •4•2•10•0•Updated Aug 8, 2021Aug 8, 2021

    • filter-fastq

      Public
      Filter reads from a FASTQ file using a list of identifiers.
      Python
      •
      MIT License
      •5•0•0•0•Updated Feb 3, 2021Feb 3, 2021

    • moosefs_ubuntu

      Public
      Install MooseFS file system on Ubuntu 16.04 via Ansible
      ansiblefilesystemubuntu1604
      ansiblefilesystemubuntu1604moosefs
      MIT License
      •1•2•0•0•Updated Jul 21, 2020Jul 21, 2020
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