genome-helpers

Collection of QoL scripts to help automate microbial assembly and downstream processes

Name		Name	Last commit message	Last commit date
Latest commit History 20 Commits
ED_gen_acc_to_name		ED_gen_acc_to_name
ED_nuc_acc_to_feature		ED_nuc_acc_to_feature
ED_pro_acc_to_cds		ED_pro_acc_to_cds
ED_pro_acc_to_faa		ED_pro_acc_to_faa
ED_pro_acc_to_name		ED_pro_acc_to_name
LICENSE		LICENSE
README.md		README.md
WIP_all_asm.sh		WIP_all_asm.sh
calc_bc		calc_bc
clean_fasta.sh		clean_fasta.sh
dna_synth		dna_synth
fasta_counter		fasta_counter
genbank_flag_downloader.sh		genbank_flag_downloader.sh
genbank_to_fasta.sh		genbank_to_fasta.sh
genbank_url_compiler.sh		genbank_url_compiler.sh
last_genome_to_genome.sh		last_genome_to_genome.sh
last_ref_to_reads.sh		last_ref_to_reads.sh
last_sc.sh		last_sc.sh
last_to_sorted_bam.sh		last_to_sorted_bam.sh
lastal_to_bam		lastal_to_bam
medaka_polypolish_everything.sh		medaka_polypolish_everything.sh
minimap_polish_everything.sh		minimap_polish_everything.sh
muscle_diverse_trim_tree.sh		muscle_diverse_trim_tree.sh
muscle_fast_trim_tree.sh		muscle_fast_trim_tree.sh
polish_everything		polish_everything
rev_complement		rev_complement
sanger_check		sanger_check
seq_counter		seq_counter
switch_ext		switch_ext

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