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Disabling setting depleted based on volume #117

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Disabling setting depleted based on volume #117

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dd8bfc0
Disabling setting depleted based on volume
May 12, 2026
5fd6dff
Disabling for the auto assigner
May 12, 2026
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4 changes: 2 additions & 2 deletions ...main/java/com/velox/sloan/cmo/workflows/kapalibrary/IndexBarcodeToSampleAutoAssigner.java
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Original file line number Diff line number Diff line change
Expand Up @@ -379,7 +379,7 @@ private Map<String, Object> setAssignedIndicesDataRecordFieldValues(DataRecord i
waterVolume = autoHelper.getVolumeOfWater(adapterStartConc, minVolInAdapterPlate, targetAdapterConc, maxPlateVolume, sampleType, isCrisprOrAmpliconSeq);
}
Double actualTargetAdapterConc = adapterStartConc / ((waterVolume + adapterVolume) / adapterVolume);
setUpdatedIndexAssignmentConfigVol(indexAssignmentConfig, adapterVolume);
//setUpdatedIndexAssignmentConfigVol(indexAssignmentConfig, adapterVolume);
Map<String, Object> indexAssignmentValues = new HashMap<>();

indexAssignmentValues.put("IndexTag", indexTag);
Expand Down Expand Up @@ -503,7 +503,7 @@ private void assignIndicesToSamples(List<DataRecord> indexAssignmentProtocolReco
}
}
setLastIndexUsed(indexAssignmentConfigs, positionOfLastUsedIndex, updatedLastIndexUsed);
checkIndexAssignmentsForDepletedAdapters(indexAssignmentConfigs);
//checkIndexAssignmentsForDepletedAdapters(indexAssignmentConfigs);
clientCallback.displayInfo(String.format("You need to use following adapter plates for this experiment:\n%s", StringUtils.join(indexAssignmentConfigPlatesToUse, "\n")));
activeTask.getTask().getTaskOptions().put("_INDEXES_AUTO_ASIGNED", "");
}
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6 changes: 3 additions & 3 deletions src/main/java/com/velox/sloan/cmo/workflows/kapalibrary/ManualIndexAssignmentHandler.java
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Expand Up @@ -97,7 +97,7 @@ public PluginResult run() throws ServerException, RemoteException {
minAdapterVolInPlate, maxPlateVolume, plateSize, sampleType, isTCRseq, species, aliquotRecipe);

logInfo("Value of setUpdatedIndexAssignmentStatus is: " + setUpdatedIndexAssignmentStatus);
checkIndexAssignmentsForDepletedAdapters(activeIndexAssignmentConfigs);
//checkIndexAssignmentsForDepletedAdapters(activeIndexAssignmentConfigs);
if (!setUpdatedIndexAssignmentStatus) {
String errMsg = String.format("The manual adapter assignment went wrong, 3 possible scenarios (if TCRseq application 2 & 3 apply):\n" +
"1) No Active record found for Index ID. Please double check to avoid discrepancies.\n" +
Expand All @@ -112,7 +112,7 @@ public PluginResult run() throws ServerException, RemoteException {
minAdapterVolInPlate, maxPlateVolume, plateSize, sampleType, isTCRseq, species, aliquotRecipe);

logInfo("Value of setUpdatedIndexAssignmentStatus is: " + setUpdatedIndexAssignmentStatus);
checkIndexAssignmentsForDepletedAdapters(activeIndexAssignmentConfigs);
//checkIndexAssignmentsForDepletedAdapters(activeIndexAssignmentConfigs);
if (!setUpdatedIndexAssignmentStatus) {
String errMsg = String.format("The manual adapter assignment went wrong, 3 possible scenarios (if TCRseq application 2 & 3 apply):\n" +
"1) No Active record found for Index ID. Please double check to avoid discrepancies.\n" +
Expand Down Expand Up @@ -222,7 +222,7 @@ private boolean setUpdatedIndexAssignmentValues(List<DataRecord> indexAssignment

Double actualTargetAdapterConc = adapterStartConc / ((waterVolume + adapterVolume) / adapterVolume);
//Double adapterConcentration = autohelper.getAdapterConcentration(indexConfig, adapterVolume, waterVolume);
setUpdatedIndexAssignmentConfigVol(indexConfig, adapterVolume);
//setUpdatedIndexAssignmentConfigVol(indexConfig, adapterVolume);
indexBarcodeRec.setDataField("BarcodePlateID", indexConfig.getStringVal("AdapterPlateId", user), user);
indexBarcodeRec.setDataField("IndexRow", adapterSourceRow, user);
indexBarcodeRec.setDataField("IndexCol", adapterSourceCol, user);
Expand Down