STAR Suite Recipes

This public repository is the canonical home for reusable, non-core STAR Suite recipes. It contains declarative workflows, open orchestration scripts, generic scatter/gather contracts, and portable storage, site, and executor profiles.

STAR Suite itself owns compiled algorithms, output semantics, release tooling, and core regression fixtures. Project-specific dataset manifests and delivery automation belong in project catalogs such as morphic-recipes.

Catalog use

The catalog follows biodepot.recipe_catalog/v1. A STAR Suite installation can load a checkout directly:

recipe_catalogs:
  - manifest: /path/to/STAR-suite-recipes/catalog.yaml
    trust: trusted

Use STAR Suite's catalog CLI to validate discovery without executing a recipe:

python3 -m mcp_server.recipe_cli --config /path/to/config.yaml catalog list
python3 -m mcp_server.recipe_cli --config /path/to/config.yaml recipe list

Released STAR Suite distributions vendor a reviewed, pinned snapshot so the official recipes remain available offline. The Git repository is canonical for development; the installed snapshot is canonical for a locked release run.

Public boundary

Recipes accept data, reference, profile, and partition-manifest inputs. They do not publish credentials, private transfer destinations, collaborator delivery manifests, or any unpublished partition-generation implementation. Scripts in this repository are open source under the MIT License.

See CONTRIBUTING.md, docs/OWNERSHIP.md, and docs/PARTITION_MANIFEST_CONTRACT.md.

Reusable execution settings are separate from recipe identity. The profile index includes generic Lustre, PSC Bridges-2, and Temporal/Slurm policies under profiles/; project catalogs supply private accounts, roots, and delivery settings without copying the workflows.