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susannasiebert merged 2 commits into from
Jul 14, 2026
Merged

Update pVACvector tests to mock predictor calls #1418

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cfc0953
Update pVACvector tests to mock predictor calls
susannasiebert Jul 7, 2026
6179d68
Fix mock file parsing logic
susannasiebert Jul 7, 2026
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121 changes: 121 additions & 0 deletions tests/test_data/pvacvector/response_HLA-A*02:01_8_ann_clipping_0_AAY.tsv
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allele seq_num start end length peptide ic50 percentile_rank
HLA-A*02:01 11 7 14 8 FAAYLPAL 2509.20 7.3
HLA-A*02:01 5 4 11 8 VWKVAAYL 4346.83 12
HLA-A*02:01 5 7 14 8 VAAYLPAL 6412.13 14
HLA-A*02:01 8 7 14 8 VAAYLPAL 6412.13 14
HLA-A*02:01 5 6 13 8 KVAAYLPA 7544.78 16
HLA-A*02:01 8 6 13 8 RVAAYLPA 11274.33 21
HLA-A*02:01 1 7 14 8 KAAYLPAL 12127.24 22
HLA-A*02:01 6 6 13 8 KVAAYPAL 13548.72 24
HLA-A*02:01 9 6 13 8 RVAAYNPL 15995.21 28
HLA-A*02:01 10 6 13 8 RVAAYPAL 17862.53 30
HLA-A*02:01 1 6 13 8 LKAAYLPA 17913.24 31
HLA-A*02:01 11 6 13 8 SFAAYLPA 18572.82 32
HLA-A*02:01 3 6 13 8 LKAAYPAL 19094.87 32
HLA-A*02:01 2 6 13 8 LKAAYNPL 19489.16 33
HLA-A*02:01 5 3 10 8 VVWKVAAY 19817.04 34
HLA-A*02:01 6 3 10 8 VVWKVAAY 19817.04 34
HLA-A*02:01 7 3 10 8 VVWKVAAY 19817.04 34
HLA-A*02:01 8 4 11 8 AARVAAYL 20754.98 35
HLA-A*02:01 7 6 13 8 KVAAYPTA 21897.58 37
HLA-A*02:01 4 8 15 8 AAYPTAWA 22676.64 39
HLA-A*02:01 7 8 15 8 AAYPTAWA 22676.64 39
HLA-A*02:01 12 8 15 8 AAYPTAWA 22676.64 39
HLA-A*02:01 3 5 12 8 ELKAAYPA 24587.94 42
HLA-A*02:01 11 4 11 8 GPSFAAYL 25755.04 45
HLA-A*02:01 1 10 17 8 YLPALRAQ 25955.04 45
HLA-A*02:01 5 10 17 8 YLPALRAQ 25955.04 45
HLA-A*02:01 8 10 17 8 YLPALRAQ 25955.04 45
HLA-A*02:01 11 10 17 8 YLPALRAQ 25955.04 45
HLA-A*02:01 4 6 13 8 LKAAYPTA 26406.86 46
HLA-A*02:01 6 4 11 8 VWKVAAYP 26473.51 46
HLA-A*02:01 7 4 11 8 VWKVAAYP 26473.51 46
HLA-A*02:01 2 8 15 8 AAYNPLGM 26951.83 47
HLA-A*02:01 9 8 15 8 AAYNPLGM 26951.83 47
HLA-A*02:01 1 4 11 8 WELKAAYL 27875.99 50
HLA-A*02:01 3 8 15 8 AAYPALRA 29014.28 53
HLA-A*02:01 6 8 15 8 AAYPALRA 29014.28 53
HLA-A*02:01 10 8 15 8 AAYPALRA 29014.28 53
HLA-A*02:01 1 9 16 8 AYLPALRA 29522.53 54
HLA-A*02:01 5 9 16 8 AYLPALRA 29522.53 54
HLA-A*02:01 8 9 16 8 AYLPALRA 29522.53 54
HLA-A*02:01 11 9 16 8 AYLPALRA 29522.53 54
HLA-A*02:01 4 9 16 8 AYPTAWAT 29603.13 54
HLA-A*02:01 7 9 16 8 AYPTAWAT 29603.13 54
HLA-A*02:01 12 9 16 8 AYPTAWAT 29603.13 54
HLA-A*02:01 8 2 9 8 WTAARVAA 30034.48 55
HLA-A*02:01 9 2 9 8 WTAARVAA 30034.48 55
HLA-A*02:01 10 2 9 8 WTAARVAA 30034.48 55
HLA-A*02:01 5 2 9 8 NVVWKVAA 30278.89 56
HLA-A*02:01 6 2 9 8 NVVWKVAA 30278.89 56
HLA-A*02:01 7 2 9 8 NVVWKVAA 30278.89 56
HLA-A*02:01 12 6 13 8 SFAAYPTA 30467.19 57
HLA-A*02:01 4 10 17 8 YPTAWATA 31642.73 60
HLA-A*02:01 7 10 17 8 YPTAWATA 31642.73 60
HLA-A*02:01 12 10 17 8 YPTAWATA 31642.73 60
HLA-A*02:01 1 8 15 8 AAYLPALR 32738.38 63
HLA-A*02:01 5 8 15 8 AAYLPALR 32738.38 63
HLA-A*02:01 8 8 15 8 AAYLPALR 32738.38 63
HLA-A*02:01 11 8 15 8 AAYLPALR 32738.38 63
HLA-A*02:01 4 5 12 8 ELKAAYPT 32937.34 64
HLA-A*02:01 12 7 14 8 FAAYPTAW 33167.29 65
HLA-A*02:01 1 2 9 8 KEWELKAA 33611.99 66
HLA-A*02:01 2 2 9 8 KEWELKAA 33611.99 66
HLA-A*02:01 3 2 9 8 KEWELKAA 33611.99 66
HLA-A*02:01 4 2 9 8 KEWELKAA 33611.99 66
HLA-A*02:01 6 5 12 8 WKVAAYPA 33762.15 67
HLA-A*02:01 1 5 12 8 ELKAAYLP 34004.49 67
HLA-A*02:01 10 5 12 8 ARVAAYPA 34158.63 68
HLA-A*02:01 5 1 8 8 ANVVWKVA 34413.48 69
HLA-A*02:01 6 1 8 8 ANVVWKVA 34413.48 69
HLA-A*02:01 7 1 8 8 ANVVWKVA 34413.48 69
HLA-A*02:01 10 4 11 8 AARVAAYP 34545.54 69
HLA-A*02:01 8 3 10 8 TAARVAAY 35590.43 73
HLA-A*02:01 9 3 10 8 TAARVAAY 35590.43 73
HLA-A*02:01 10 3 10 8 TAARVAAY 35590.43 73
HLA-A*02:01 11 2 9 8 GPGPSFAA 36591.98 76
HLA-A*02:01 12 2 9 8 GPGPSFAA 36591.98 76
HLA-A*02:01 5 5 12 8 WKVAAYLP 36775.75 77
HLA-A*02:01 7 7 14 8 VAAYPTAW 36940.05 78
HLA-A*02:01 1 3 10 8 EWELKAAY 37043.73 78
HLA-A*02:01 2 3 10 8 EWELKAAY 37043.73 78
HLA-A*02:01 3 3 10 8 EWELKAAY 37043.73 78
HLA-A*02:01 4 3 10 8 EWELKAAY 37043.73 78
HLA-A*02:01 8 1 8 8 AWTAARVA 37222.11 79
HLA-A*02:01 9 1 8 8 AWTAARVA 37222.11 79
HLA-A*02:01 10 1 8 8 AWTAARVA 37222.11 79
HLA-A*02:01 9 4 11 8 AARVAAYN 37323.72 79
HLA-A*02:01 7 5 12 8 WKVAAYPT 37503.47 80
HLA-A*02:01 11 5 12 8 PSFAAYLP 37509.96 80
HLA-A*02:01 4 7 14 8 KAAYPTAW 37522.95 80
HLA-A*02:01 8 5 12 8 ARVAAYLP 37873.33 81
HLA-A*02:01 11 3 10 8 PGPSFAAY 38325.52 83
HLA-A*02:01 12 3 10 8 PGPSFAAY 38325.52 83
HLA-A*02:01 3 4 11 8 WELKAAYP 38470.11 83
HLA-A*02:01 4 4 11 8 WELKAAYP 38470.11 83
HLA-A*02:01 1 1 8 8 AKEWELKA 38476.76 83
HLA-A*02:01 2 1 8 8 AKEWELKA 38476.76 83
HLA-A*02:01 3 1 8 8 AKEWELKA 38476.76 83
HLA-A*02:01 4 1 8 8 AKEWELKA 38476.76 83
HLA-A*02:01 2 9 16 8 AYNPLGMR 38570.55 83
HLA-A*02:01 9 9 16 8 AYNPLGMR 38570.55 83
HLA-A*02:01 2 10 17 8 YNPLGMRG 38623.17 84
HLA-A*02:01 9 10 17 8 YNPLGMRG 38623.17 84
HLA-A*02:01 12 4 11 8 GPSFAAYP 38678.36 84
HLA-A*02:01 2 5 12 8 ELKAAYNP 38817.97 84
HLA-A*02:01 6 7 14 8 VAAYPALR 39166.88 85
HLA-A*02:01 10 7 14 8 VAAYPALR 39166.88 85
HLA-A*02:01 3 9 16 8 AYPALRAQ 39203.34 86
HLA-A*02:01 6 9 16 8 AYPALRAQ 39203.34 86
HLA-A*02:01 10 9 16 8 AYPALRAQ 39203.34 86
HLA-A*02:01 3 7 14 8 KAAYPALR 39829.28 88
HLA-A*02:01 12 5 12 8 PSFAAYPT 40206.41 89
HLA-A*02:01 3 10 17 8 YPALRAQT 40273.44 89
HLA-A*02:01 6 10 17 8 YPALRAQT 40273.44 89
HLA-A*02:01 10 10 17 8 YPALRAQT 40273.44 89
HLA-A*02:01 9 7 14 8 VAAYNPLG 40672.81 90
HLA-A*02:01 2 4 11 8 WELKAAYN 40980.26 91
HLA-A*02:01 2 7 14 8 KAAYNPLG 41055.70 92
HLA-A*02:01 9 5 12 8 ARVAAYNP 41535.58 93
HLA-A*02:01 11 1 8 8 PGPGPSFA 42842.36 96
HLA-A*02:01 12 1 8 8 PGPGPSFA 42842.36 96
141 changes: 141 additions & 0 deletions tests/test_data/pvacvector/response_HLA-A*02:01_8_ann_clipping_0_None.tsv
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allele seq_num start end length peptide ic50 percentile_rank
HLA-A*02:01 6 4 11 8 VWKVLPAL 4863.91 12
HLA-A*02:01 6 3 10 8 VVWKVLPA 5978.35 14
HLA-A*02:01 7 3 10 8 VVWKVPAL 9265.73 18
HLA-A*02:01 8 3 10 8 VVWKVPTA 13818.76 24
HLA-A*02:01 14 4 11 8 AARVLPAL 22506.52 38
HLA-A*02:01 6 6 13 8 KVLPALRA 22646.00 39
HLA-A*02:01 18 7 14 8 FLPALRAQ 22936.98 39
HLA-A*02:01 14 3 10 8 TAARVLPA 23082.86 39
HLA-A*02:01 16 3 10 8 TAARVPAL 24979.17 43
HLA-A*02:01 14 6 13 8 RVLPALRA 25085.34 43
HLA-A*02:01 15 3 10 8 TAARVNPL 25257.19 44
HLA-A*02:01 4 6 13 8 LKPTAWAT 25446.47 44
HLA-A*02:01 8 6 13 8 KVPTAWAT 25638.54 45
HLA-A*02:01 18 4 11 8 GPSFLPAL 25734.70 45
HLA-A*02:01 16 2 9 8 WTAARVPA 26907.84 47
HLA-A*02:01 18 6 13 8 SFLPALRA 27678.53 49
HLA-A*02:01 1 6 13 8 LKLPALRA 27698.01 49
HLA-A*02:01 20 6 13 8 SFPTAWAT 27698.62 49
HLA-A*02:01 7 2 9 8 NVVWKVPA 28467.91 51
HLA-A*02:01 6 2 9 8 NVVWKVLP 28594.80 52
HLA-A*02:01 2 5 12 8 ELKNPLGM 28827.47 52
HLA-A*02:01 20 7 14 8 FPTAWATA 28832.15 52
HLA-A*02:01 1 4 11 8 WELKLPAL 29405.21 54
HLA-A*02:01 1 3 10 8 EWELKLPA 29995.85 55
HLA-A*02:01 6 1 8 8 ANVVWKVL 30196.11 56
HLA-A*02:01 4 5 12 8 ELKPTAWA 30315.61 56
HLA-A*02:01 14 2 9 8 WTAARVLP 31029.09 58
HLA-A*02:01 3 5 12 8 ELKPALRA 31822.31 61
HLA-A*02:01 6 7 14 8 VLPALRAQ 32009.11 61
HLA-A*02:01 14 7 14 8 VLPALRAQ 32009.11 61
HLA-A*02:01 1 7 14 8 KLPALRAQ 32103.12 61
HLA-A*02:01 7 4 11 8 VWKVPALR 32214.46 62
HLA-A*02:01 3 2 9 8 KEWELKPA 32398.67 62
HLA-A*02:01 8 4 11 8 VWKVPTAW 32587.81 63
HLA-A*02:01 14 1 8 8 AWTAARVL 32939.46 64
HLA-A*02:01 8 7 14 8 VPTAWATA 33199.95 65
HLA-A*02:01 1 5 12 8 ELKLPALR 33709.96 66
HLA-A*02:01 2 3 10 8 EWELKNPL 34645.50 70
HLA-A*02:01 3 3 10 8 EWELKPAL 34670.62 70
HLA-A*02:01 5 4 11 8 VWKVKSQA 34809.68 70
HLA-A*02:01 8 2 9 8 NVVWKVPT 34812.33 70
HLA-A*02:01 1 2 9 8 KEWELKLP 35276.04 72
HLA-A*02:01 1 1 8 8 AKEWELKL 35414.86 72
HLA-A*02:01 15 5 12 8 ARVNPLGM 35521.56 73
HLA-A*02:01 6 5 12 8 WKVLPALR 35522.71 73
HLA-A*02:01 14 5 12 8 ARVLPALR 35964.74 74
HLA-A*02:01 8 5 12 8 WKVPTAWA 35988.10 74
HLA-A*02:01 18 3 10 8 PGPSFLPA 36270.34 75
HLA-A*02:01 20 5 12 8 PSFPTAWA 36567.44 76
HLA-A*02:01 19 5 12 8 PSFNPLGM 36656.57 77
HLA-A*02:01 4 2 9 8 KEWELKPT 37025.29 78
HLA-A*02:01 15 6 13 8 RVNPLGMR 37025.70 78
HLA-A*02:01 4 7 14 8 KPTAWATA 37189.09 78
HLA-A*02:01 12 7 14 8 SPTAWATA 37203.58 78
HLA-A*02:01 19 6 13 8 SFNPLGMR 37255.95 79
HLA-A*02:01 18 5 12 8 PSFLPALR 37268.45 79
HLA-A*02:01 4 4 11 8 WELKPTAW 37441.03 79
HLA-A*02:01 4 3 10 8 EWELKPTA 37441.44 79
HLA-A*02:01 16 4 11 8 AARVPALR 37442.64 79
HLA-A*02:01 3 6 13 8 LKPALRAQ 37506.71 80
HLA-A*02:01 7 5 12 8 WKVPALRA 37584.29 80
HLA-A*02:01 16 5 12 8 ARVPALRA 37598.14 80
HLA-A*02:01 10 5 12 8 GPSNPLGM 37663.69 80
HLA-A*02:01 19 7 14 8 FNPLGMRG 37835.22 81
HLA-A*02:01 19 3 10 8 PGPSFNPL 37845.05 81
HLA-A*02:01 2 6 13 8 LKNPLGMR 37870.45 81
HLA-A*02:01 11 3 10 8 GPGPSPAL 37986.59 81
HLA-A*02:01 20 4 11 8 GPSFPTAW 38062.70 82
HLA-A*02:01 15 2 9 8 WTAARVNP 38174.46 82
HLA-A*02:01 18 2 9 8 GPGPSFLP 38608.55 84
HLA-A*02:01 12 5 12 8 GPSPTAWA 38713.97 84
HLA-A*02:01 5 1 8 8 ANVVWKVK 38794.05 84
HLA-A*02:01 5 3 10 8 VVWKVKSQ 38955.98 85
HLA-A*02:01 20 2 9 8 GPGPSFPT 39212.67 86
HLA-A*02:01 7 1 8 8 ANVVWKVP 39256.83 86
HLA-A*02:01 8 1 8 8 ANVVWKVP 39256.83 86
HLA-A*02:01 15 4 11 8 AARVNPLG 39312.92 86
HLA-A*02:01 10 3 10 8 GPGPSNPL 39422.39 86
HLA-A*02:01 11 5 12 8 GPSPALRA 39513.36 87
HLA-A*02:01 3 4 11 8 WELKPALR 39584.40 87
HLA-A*02:01 7 6 13 8 KVPALRAQ 39694.19 87
HLA-A*02:01 16 6 13 8 RVPALRAQ 39700.21 87
HLA-A*02:01 15 7 14 8 VNPLGMRG 39729.41 87
HLA-A*02:01 12 6 13 8 PSPTAWAT 40093.88 89
HLA-A*02:01 2 2 9 8 KEWELKNP 40161.62 89
HLA-A*02:01 18 1 8 8 PGPGPSFL 40208.59 89
HLA-A*02:01 10 7 14 8 SNPLGMRG 40766.22 91
HLA-A*02:01 2 7 14 8 KNPLGMRG 40871.78 91
HLA-A*02:01 20 3 10 8 PGPSFPTA 40968.74 91
HLA-A*02:01 10 6 13 8 PSNPLGMR 41075.25 92
HLA-A*02:01 12 4 11 8 PGPSPTAW 41101.48 92
HLA-A*02:01 12 3 10 8 GPGPSPTA 41178.50 92
HLA-A*02:01 7 7 14 8 VPALRAQT 41425.18 93
HLA-A*02:01 16 7 14 8 VPALRAQT 41425.18 93
HLA-A*02:01 19 2 9 8 GPGPSFNP 41484.37 93
HLA-A*02:01 3 1 8 8 AKEWELKP 41567.50 93
HLA-A*02:01 4 1 8 8 AKEWELKP 41567.50 93
HLA-A*02:01 5 2 9 8 NVVWKVKS 41668.36 93
HLA-A*02:01 13 1 8 8 AWTAARVK 41697.23 93
HLA-A*02:01 11 6 13 8 PSPALRAQ 41982.87 94
HLA-A*02:01 19 4 11 8 GPSFNPLG 42043.34 94
HLA-A*02:01 16 1 8 8 AWTAARVP 42046.06 94
HLA-A*02:01 13 4 11 8 AARVKSQA 42092.04 94
HLA-A*02:01 17 7 14 8 FKSQAAPG 42175.93 95
HLA-A*02:01 2 4 11 8 WELKNPLG 42187.79 95
HLA-A*02:01 13 2 9 8 WTAARVKS 42209.70 95
HLA-A*02:01 13 5 12 8 ARVKSQAA 42443.74 95
HLA-A*02:01 11 7 14 8 SPALRAQT 42463.01 95
HLA-A*02:01 3 7 14 8 KPALRAQT 42585.87 96
HLA-A*02:01 5 5 12 8 WKVKSQAA 42741.44 96
HLA-A*02:01 17 2 9 8 GPGPSFKS 42796.96 96
HLA-A*02:01 5 6 13 8 KVKSQAAP 42911.49 96
HLA-A*02:01 2 1 8 8 AKEWELKN 42927.27 96
HLA-A*02:01 17 6 13 8 SFKSQAAP 42970.50 96
HLA-A*02:01 13 6 13 8 RVKSQAAP 43031.43 97
HLA-A*02:01 11 2 9 8 PGPGPSPA 43110.20 97
HLA-A*02:01 11 4 11 8 PGPSPALR 43197.04 97
HLA-A*02:01 17 3 10 8 PGPSFKSQ 43628.24 98
HLA-A*02:01 15 1 8 8 AWTAARVN 43686.80 98
HLA-A*02:01 5 7 14 8 VKSQAAPG 43731.26 98
HLA-A*02:01 13 7 14 8 VKSQAAPG 43731.26 98
HLA-A*02:01 17 5 12 8 PSFKSQAA 43739.78 98
HLA-A*02:01 9 7 14 8 SKSQAAPG 44120.52 99
HLA-A*02:01 13 3 10 8 TAARVKSQ 44132.92 99
HLA-A*02:01 11 1 8 8 APGPGPSP 44138.64 99
HLA-A*02:01 12 1 8 8 APGPGPSP 44138.64 99
HLA-A*02:01 9 5 12 8 GPSKSQAA 44243.83 99
HLA-A*02:01 17 4 11 8 GPSFKSQA 44272.09 99
HLA-A*02:01 9 1 8 8 APGPGPSK 44394.89 99
HLA-A*02:01 20 1 8 8 PGPGPSFP 44755.17 100
HLA-A*02:01 17 1 8 8 PGPGPSFK 44758.55 100
HLA-A*02:01 10 1 8 8 APGPGPSN 44867.16 100
HLA-A*02:01 12 2 9 8 PGPGPSPT 44892.89 100
HLA-A*02:01 10 4 11 8 PGPSNPLG 44981.89 100
HLA-A*02:01 19 1 8 8 PGPGPSFN 45414.68 100
HLA-A*02:01 10 2 9 8 PGPGPSNP 45902.74 100
HLA-A*02:01 9 6 13 8 PSKSQAAP 46043.04 100
HLA-A*02:01 9 3 10 8 GPGPSKSQ 46103.36 100
HLA-A*02:01 9 2 9 8 PGPGPSKS 46474.47 100
HLA-A*02:01 9 4 11 8 PGPSKSQA 46582.71 100
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