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eduramosalves/README.md

Eduardo Ramos Alves

Biomedical scientist moving into Data Science, Bioinformatics & GenAI for healthcare.
I understand the biology behind the data — I was the one running the PCR and the NGS.

LinkedIn · Lattes · Email


About

I'm a biomedical scientist (EBMSP, 2024) and former CNPq research scholar in genomic surveillance of arboviruses and COVID-19. I'm now completing two postgraduate programs at PUC Minas — Data Science Applied to Healthcare and Bioinformatics Applied to Healthcare — and building toward data/AI roles where wet-lab intuition meets code.

  • 🔬 Background: NGS sequencing, PCR, genomic surveillance, clinical pathology
  • 📊 Now working in: Python, R, SQL, machine learning, NLP and Generative AI
  • 🌱 Currently learning: LLMs / GenAI, Linux, bioinformatics pipelines
  • 🇧🇷 Based in Bahia, Brazil · open to remote / relocation

Featured project

genai-biomedical-nlp — an end-to-end GenAI + NLP pipeline over PubMed literature (arbovirus surveillance): PubMed collection via NCBI Entrez → zero-shot classification + biomedical NER (Hugging Face) → LLM summarization → validation (scikit-learn). Runs free on Colab.

Also studying (open notes)

Toolbox

Python · R · SQL · Julia · scikit-learn · Pandas · Hugging Face · Power BI · Git · AWS · Jupyter


Biology + data. Always learning.

Popular repositories Loading

  1. genai-biomedical-nlp genai-biomedical-nlp Public

    End-to-end GenAI + NLP pipeline over PubMed biomedical literature (arbovirus surveillance): zero-shot classification, biomedical NER, LLM summarization, validation. Runs on Colab.

    Jupyter Notebook 1

  2. PyR4MDS PyR4MDS Public

    Forked from moderndatadesign/PyR4MDS

    Companion code repository for the O'Reilly "Python and R for the Modern Data Scientist" book.

    Jupyter Notebook

  3. biopython biopython Public

    Forked from biopython/biopython

    Official git repository for Biopython (originally converted from CVS)

    Python

  4. TMwR TMwR Public

    Forked from tidymodels/TMwR

    Code and content for "Tidy Modeling with R"

    RMarkdown

  5. eduramosalves eduramosalves Public

    Profile README

  6. bioinformatics-with-biopython bioinformatics-with-biopython Public

    My Biopython study notes and exercises — sequences, FASTA parsing, NCBI Entrez, applied to genomic surveillance.

    Jupyter Notebook