Add gorz extension#2213
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Read/write GORpipe .gorz files and .gord dictionaries as native DuckDB tables (read_gor/read_gorz/read_gord + replacement scan + COPY TO + range/f/ff filters). Repo: gorfather/duckdb-gorz @ v0.1.0.
…n_serializer link fix)
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Hi @samansmink — gentle nudge on this one when you get a chance. The CI runs are sitting in |
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Thanks! |
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Adds gorz — read GORpipe
.gorzand.gordfiles and write.gorzas native DuckDB tables.GORpipe (https://github.com/gorpipe/gor) is a genomic analysis engine;
.gorzis its block-compressed, genomically-ordered table format and.gorda dictionary of partition files. This extension exposes them to DuckDB:read_gor/read_gorz/read_gordtable functions (projection + parallel scan,WHERE chrom/pos→ block seek,range := 'chrN:a-b'GOR-pfilter,f/ffpartition-tag filters).FROM 'x.gorz'works directly.COPY (…) TO 'x.gorz' (FORMAT gorz)— write path (validates GOR order).s3://…with httpfs).Files written are read/seeked natively by
gorpipeitself, and vice-versa.make test: 29/29 assertions pass).