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explicitly create empty default map when loading SBML file #550

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Merged
Paulocracy merged 3 commits into from
Nov 4, 2025
Merged

explicitly create empty default map when loading SBML file #550

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66636b1
explicitly create empty default map when loading SBML file
axelvonkamp Oct 21, 2025
39885d0
(hopefully) Fix #551
Paulocracy Nov 4, 2025
7a7663e
Fix the fix ;-)
Paulocracy Nov 4, 2025
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4 changes: 3 additions & 1 deletion cnapy/gui_elements/main_window.py
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Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@
QMainWindow, QMessageBox, QToolBar, QShortcut, QStatusBar, QLabel)
from qtpy.QtWebEngineWidgets import QWebEngineView

from cnapy.appdata import AppData
from cnapy.appdata import AppData, CnaMap
from cnapy.gui_elements.about_dialog import AboutDialog
from cnapy.gui_elements.central_widget import CentralWidget, ModelTabIndex
from cnapy.gui_elements.clipboard_calculator import ClipboardCalculator
Expand Down Expand Up @@ -1265,6 +1265,8 @@ def new_project_from_sbml(self, filename=''):
self.appdata.project.cobra_py_model = cobra_py_model
self.set_current_filename(filename)

default_map = CnaMap("Map")
self.appdata.project.maps = {"Map": default_map}
self.recreate_maps()
self.centralWidget().update(rebuild_all_tabs=True)
self.update_scenario_file_name()
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4 changes: 2 additions & 2 deletions pyproject.toml
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Expand Up @@ -19,14 +19,14 @@ dependencies = [
"appdirs>=1.4",
"matplotlib>=3.6",
"requests>=2.28",
"cobra>=0.29",
"cobra>=0.30",
"efmtool_link>=0.0.8",
"optlang_enumerator>=0.0.12",
"straindesign>=1.12",
"qtpy>=2.3",
"pyqtwebengine>=5.15",
"qtconsole==5.4",
"gurobipy==11.*",
"gurobipy>=12.0",
"cplex==22.1.2.0", # We use this specific version as it's currently the last one with support for ARM CPUs
"numpy==1.23",
"scipy==1.12",
Expand Down