Revamp CLI#27

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GiulioTani wants to merge 12 commits intobids-apps:developfrom

GiulioTani:RevampCLI

Commits on Apr 24, 2026

Reorganise CLI arguments and adopt single source of truth for default parameters.
Giulio Tani Raffaelli
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Adopt single source of truth for default parameters in GUI
Giulio Tani Raffaelli
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Refactor run_rsHRF.
Giulio Tani Raffaelli
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Pass CLI parameters to GUI.
Giulio Tani Raffaelli
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TR should NOT have a default
Giulio Tani Raffaelli
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Fixes
Giulio Tani Raffaelli
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Commits on Apr 25, 2026

Simplify and standardise CLI arguments
Giulio Tani Raffaelli
committed

Commits on Apr 27, 2026

Use single source of truth for estimation options.
Giulio Tani Raffaelli
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Small fixes
Giulio Tani Raffaelli
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Commits on Apr 28, 2026

Add testing for CLI
Giulio Tani Raffaelli
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Test coverage to 94% of CLI.py
Giulio Tani Raffaelli
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Fix regression
Giulio Tani Raffaelli
committed