Updated bftools version from 5.6 to 6.14.0

.github/workflows/build.yml

@@ -37,8 +37,8 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [windows-latest, ubuntu-22.04, macos-13]
-        python: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"]
+        os: [windows-latest, ubuntu-22.04, macos-14]
+        python: ["3.8", "3.9", "3.10", "3.11", "3.12"]
     steps:
       - name: Checkout repo
         uses: actions/checkout@v1

.github/workflows/integration_test.yml

@@ -67,7 +67,7 @@ jobs:
 
       - name: Install bftools
         run: |
-          wget http://downloads.openmicroscopy.org/latest/bio-formats5.6/artifacts/bftools.zip
+          wget https://downloads.openmicroscopy.org/bio-formats/6.14.0/artifacts/bftools.zip
           unzip bftools.zip
 
       - name: Download test data

README.md

@@ -27,7 +27,7 @@ To run the tool, you need to configure bftools and vips. To do that, follow the
 
 ### [Ubuntu](https://github.com/andreped/vsi2tif#ubuntu)</summary>
 
-1. Download bftools (click [here](http://downloads.openmicroscopy.org/latest/bio-formats5.6/artifacts/bftools.zip))
+1. Download bftools (click [here](https://downloads.openmicroscopy.org/bio-formats/6.14.0/artifacts/bftools.zip))
 
 2. Install vips and JDK
 ```
@@ -44,7 +44,7 @@ sudo apt install libvips-tools
 
 ### [macOS](https://github.com/andreped/vsi2tif#macos)</summary>
 
-1. Download bftools (click [here](http://downloads.openmicroscopy.org/latest/bio-formats5.6/artifacts/bftools.zip))
+1. Download bftools (click [here](https://downloads.openmicroscopy.org/bio-formats/6.14.0/artifacts/bftools.zip))
 
 2. Install vips and JDK
 ```
@@ -61,7 +61,7 @@ brew install vips
 
 To install bftools and vips, I recommend using Powershell as much as possible to automate the installation steps.
 
-1. Download bftools (click [here](http://downloads.openmicroscopy.org/latest/bio-formats5.6/artifacts/bftools.zip))
+1. Download bftools (click [here](https://downloads.openmicroscopy.org/bio-formats/6.14.0/artifacts/bftools.zip))
 
 2. Download vips binary from Windows from [here](https://github.com/libvips/build-win64-mxe/releases) or use wget or similar
 ```

notebooks/conversion_tutorial_macos.ipynb

@@ -22,12 +22,12 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "\u001b[34m==>\u001b[0m \u001b[1mDownloading https://formulae.brew.sh/api/cask.jws.json\u001b[0m\n",
+      "\u001B[34m==>\u001B[0m \u001B[1mDownloading https://formulae.brew.sh/api/cask.jws.json\u001B[0m\n",
       "#=#=#                                                                           \n",
-      "\u001b[33mWarning:\u001b[0m Not upgrading zulu@8, the latest version is already installed\n",
-      "\u001b[34m==>\u001b[0m \u001b[1mDownloading https://formulae.brew.sh/api/formula.jws.json\u001b[0m\n",
+      "\u001B[33mWarning:\u001B[0m Not upgrading zulu@8, the latest version is already installed\n",
+      "\u001B[34m==>\u001B[0m \u001B[1mDownloading https://formulae.brew.sh/api/formula.jws.json\u001B[0m\n",
       "#=#=#                                                                           \n",
-      "\u001b[33mWarning:\u001b[0m vips 8.15.3 is already installed and up-to-date.\n",
+      "\u001B[33mWarning:\u001B[0m vips 8.15.3 is already installed and up-to-date.\n",
       "To reinstall 8.15.3, run:\n",
       "  brew reinstall vips\n"
      ]
@@ -100,7 +100,7 @@
    ],
    "source": [
     "# Configure bftools\n",
-    "!wget http://downloads.openmicroscopy.org/latest/bio-formats5.6/artifacts/bftools.zip\n",
+    "!wget https://downloads.openmicroscopy.org/bio-formats/6.14.0/artifacts/bftools.zip\n",
     "!unzip bftools.zip"
    ]
   },
@@ -117,12 +117,12 @@
       "  Cloning https://github.com/andreped/vsi2tif to /private/var/folders/k0/9nz8fj4d1dx9g7ywxfnr8c5h0000gq/T/pip-req-build-e6bn_gg6\n",
       "  Running command git clone --filter=blob:none --quiet https://github.com/andreped/vsi2tif /private/var/folders/k0/9nz8fj4d1dx9g7ywxfnr8c5h0000gq/T/pip-req-build-e6bn_gg6\n",
       "  Resolved https://github.com/andreped/vsi2tif to commit ea364b628e1e12dd25a0123bef48b09251ba2e7a\n",
-      "  Preparing metadata (setup.py) ... \u001b[?25ldone\n",
-      "\u001b[?25hRequirement already satisfied: tqdm in /Users/andreped/workspace/vsi2tif/venv/lib/python3.10/site-packages (from vsi2tif==0.1.0) (4.66.5)\n",
+      "  Preparing metadata (setup.py) ... \u001B[?25ldone\n",
+      "\u001B[?25hRequirement already satisfied: tqdm in /Users/andreped/workspace/vsi2tif/venv/lib/python3.10/site-packages (from vsi2tif==0.1.0) (4.66.5)\n",
       "Requirement already satisfied: numpy in /Users/andreped/workspace/vsi2tif/venv/lib/python3.10/site-packages (from vsi2tif==0.1.0) (2.1.0)\n",
       "\n",
-      "\u001b[1m[\u001b[0m\u001b[34;49mnotice\u001b[0m\u001b[1;39;49m]\u001b[0m\u001b[39;49m A new release of pip is available: \u001b[0m\u001b[31;49m23.0.1\u001b[0m\u001b[39;49m -> \u001b[0m\u001b[32;49m24.2\u001b[0m\n",
-      "\u001b[1m[\u001b[0m\u001b[34;49mnotice\u001b[0m\u001b[1;39;49m]\u001b[0m\u001b[39;49m To update, run: \u001b[0m\u001b[32;49mpip install --upgrade pip\u001b[0m\n"
+      "\u001B[1m[\u001B[0m\u001B[34;49mnotice\u001B[0m\u001B[1;39;49m]\u001B[0m\u001B[39;49m A new release of pip is available: \u001B[0m\u001B[31;49m23.0.1\u001B[0m\u001B[39;49m -> \u001B[0m\u001B[32;49m24.2\u001B[0m\n",
+      "\u001B[1m[\u001B[0m\u001B[34;49mnotice\u001B[0m\u001B[1;39;49m]\u001B[0m\u001B[39;49m To update, run: \u001B[0m\u001B[32;49mpip install --upgrade pip\u001B[0m\n"
      ]
     }
    ],
@@ -244,13 +244,13 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "\u001b[33mWarning:\u001b[0m openslide 4.0.0 is already installed and up-to-date.\n",
+      "\u001B[33mWarning:\u001B[0m openslide 4.0.0 is already installed and up-to-date.\n",
       "To reinstall 4.0.0, run:\n",
       "  brew reinstall openslide\n",
       "Requirement already satisfied: openslide-bin in /Users/andreped/workspace/vsi2tif/venv/lib/python3.10/site-packages (4.0.0.4)\n",
       "\n",
-      "\u001b[1m[\u001b[0m\u001b[34;49mnotice\u001b[0m\u001b[1;39;49m]\u001b[0m\u001b[39;49m A new release of pip is available: \u001b[0m\u001b[31;49m23.0.1\u001b[0m\u001b[39;49m -> \u001b[0m\u001b[32;49m24.2\u001b[0m\n",
-      "\u001b[1m[\u001b[0m\u001b[34;49mnotice\u001b[0m\u001b[1;39;49m]\u001b[0m\u001b[39;49m To update, run: \u001b[0m\u001b[32;49mpip install --upgrade pip\u001b[0m\n"
+      "\u001B[1m[\u001B[0m\u001B[34;49mnotice\u001B[0m\u001B[1;39;49m]\u001B[0m\u001B[39;49m A new release of pip is available: \u001B[0m\u001B[31;49m23.0.1\u001B[0m\u001B[39;49m -> \u001B[0m\u001B[32;49m24.2\u001B[0m\n",
+      "\u001B[1m[\u001B[0m\u001B[34;49mnotice\u001B[0m\u001B[1;39;49m]\u001B[0m\u001B[39;49m To update, run: \u001B[0m\u001B[32;49mpip install --upgrade pip\u001B[0m\n"
      ]
     }
    ],
@@ -282,8 +282,8 @@
       "Requirement already satisfied: pyparsing>=2.3.1 in /Users/andreped/workspace/vsi2tif/venv/lib/python3.10/site-packages (from matplotlib) (3.1.4)\n",
       "Requirement already satisfied: six>=1.5 in /Users/andreped/workspace/vsi2tif/venv/lib/python3.10/site-packages (from python-dateutil>=2.7->matplotlib) (1.16.0)\n",
       "\n",
-      "\u001b[1m[\u001b[0m\u001b[34;49mnotice\u001b[0m\u001b[1;39;49m]\u001b[0m\u001b[39;49m A new release of pip is available: \u001b[0m\u001b[31;49m23.0.1\u001b[0m\u001b[39;49m -> \u001b[0m\u001b[32;49m24.2\u001b[0m\n",
-      "\u001b[1m[\u001b[0m\u001b[34;49mnotice\u001b[0m\u001b[1;39;49m]\u001b[0m\u001b[39;49m To update, run: \u001b[0m\u001b[32;49mpip install --upgrade pip\u001b[0m\n"
+      "\u001B[1m[\u001B[0m\u001B[34;49mnotice\u001B[0m\u001B[1;39;49m]\u001B[0m\u001B[39;49m A new release of pip is available: \u001B[0m\u001B[31;49m23.0.1\u001B[0m\u001B[39;49m -> \u001B[0m\u001B[32;49m24.2\u001B[0m\n",
+      "\u001B[1m[\u001B[0m\u001B[34;49mnotice\u001B[0m\u001B[1;39;49m]\u001B[0m\u001B[39;49m To update, run: \u001B[0m\u001B[32;49mpip install --upgrade pip\u001B[0m\n"
      ]
     }
    ],