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InstitutoTodosPelaSaude / flexpipe Public

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PR: Backbone subsampling — stable sequence set across reruns - #9

#9

Merged

filiperomero2 merged 5 commits into

mainInstitutoTodosPelaSaude/flexpipe:mainfrom

feat/major_code_reviewInstitutoTodosPelaSaude/flexpipe:feat/major_code_reviewCopy head branch name to clipboard

Jun 10, 2026

Conversation Commits5 (5)Checks Files changed

Merged

PR: Backbone subsampling — stable sequence set across reruns#9
filiperomero2 merged 5 commits into
mainfrom
feat/major_code_review

Commits

Commits on Jun 10, 2026

feat(backbone): add paths + config schema for backbone subsampling

filiperomero2
and
claude
committed
feat(backbone): inject __backbone__ sample set in resolve_subsample_config

filiperomero2
and
claude
committed
feat(backbone): wire --backbone-from into run.py orchestrator

filiperomero2
and
claude
committed
feat(backbone): wire backbone_strains through ingest Snakefile

filiperomero2
and
claude
committed
docs(backbone): document --backbone-from usage, limitations, and internals

filiperomero2
and
claude
committed

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