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BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

31 followers
Vancouver, BC
http://www.bccdc.ca/publichealthlab

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ncov2019-artic-nf ncov2019-artic-nf Public

Forked from connor-lab/ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

Nextflow 4 1
illumina-uploader illumina-uploader Public

Watch for new files in Illumina sequencer and upload to remote server

Python 4 1
mpxv-artic-nf mpxv-artic-nf Public

Nextflow 3 4
covid-qc covid-qc Public

Static site for displaying COVID-19 sequencing quality control data

Clojure 5

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Showing 10 of 138 repositories

amplicone Public
Nextfllow pipeline for simulating amplicon-based sequencing reads using ART

BCCDC-PHL/amplicone’s past year of commit activity

Python 0 MIT 1 1 0 Updated Jun 12, 2026
determinator Public
Split fastq reads based on competitive mapping to multiple references through bwa or bbsplit

BCCDC-PHL/determinator’s past year of commit activity

Nextflow 0 0 3 1 Updated Jun 6, 2026
symlink-seqs Public
Create fastq symlinks for selected samples in sequencer output directories based on several criteria

BCCDC-PHL/symlink-seqs’s past year of commit activity

Python 0 0 0 0 Updated Jun 1, 2026
ncov-tools-nf Public
A nextflow-based workflow for running ncov-tools

BCCDC-PHL/ncov-tools-nf’s past year of commit activity

Nextflow 2 3 1 0 Updated May 28, 2026
ncov-tools Public Forked from jts/ncov-tools
Small collection of tools for performing quality control on coronavirus sequencing data and genomes

BCCDC-PHL/ncov-tools’s past year of commit activity

Python 0 MIT 15 3 1 Updated May 28, 2026
auto-illumina-run-qc-check Public
Automated Primary Sequence QC Checks for Illumina Sequencing Runs

BCCDC-PHL/auto-illumina-run-qc-check’s past year of commit activity

Python 1 0 1 0 Updated May 27, 2026
wasteflow2 Public
Nextflow pipeline for probe-enriched pathogen surveillance in wastewater

BCCDC-PHL/wasteflow2’s past year of commit activity

Nextflow 0 MIT 0 2 1 Updated May 26, 2026
hcv-nf Public
Genomic analysis pipeline for genotyping of Hepatitis C Virus

BCCDC-PHL/hcv-nf’s past year of commit activity

Python 2 MIT 0 0 1 Updated May 6, 2026
routine-assembly Public
Pipeline for performing routine genome assembly

BCCDC-PHL/routine-assembly’s past year of commit activity

Nextflow 2 2 6 0 Updated Apr 30, 2026
nfflu-results-collector Public

BCCDC-PHL/nfflu-results-collector’s past year of commit activity

Python 0 0 0 0 Updated Apr 21, 2026

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