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dev/CONTRIBUTING.html

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dev/articles/loo2-elpd.md

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@@ -123,7 +123,7 @@ stanmodel <- stan_model(model_code = stancode)
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Running /opt/R/4.6.1/lib/R/bin/R CMD SHLIB foo.c
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using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
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gcc -std=gnu2x -I"/opt/R/4.6.1/lib/R/include" -DNDEBUG -I"/home/runner/work/_temp/Library/Rcpp/include/" -I"/home/runner/work/_temp/Library/RcppEigen/include/" -I"/home/runner/work/_temp/Library/RcppEigen/include/unsupported" -I"/home/runner/work/_temp/Library/BH/include" -I"/home/runner/work/_temp/Library/StanHeaders/include/src/" -I"/home/runner/work/_temp/Library/StanHeaders/include/" -I"/home/runner/work/_temp/Library/RcppParallel/include/" -I"/home/runner/work/_temp/Library/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include '/home/runner/work/_temp/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp' -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1 -I/usr/local/include -fpic -g -O2 -c foo.c -o foo.o
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gcc -std=gnu2x -I"/opt/R/4.6.1/lib/R/include" -DNDEBUG -I"/home/runner/work/_temp/Library/Rcpp/include/" -I"/home/runner/work/_temp/Library/RcppEigen/include/" -I"/home/runner/work/_temp/Library/RcppEigen/include/unsupported" -I"/home/runner/work/_temp/Library/BH/include" -I"/home/runner/work/_temp/Library/StanHeaders/include/src/" -I"/home/runner/work/_temp/Library/StanHeaders/include/" -I"/home/runner/work/_temp/Library/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/home/runner/work/_temp/Library/RcppParallel/include -I"/home/runner/work/_temp/Library/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include '/home/runner/work/_temp/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp' -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1 -I/usr/local/include -fpic -g -O2 -c foo.c -o foo.o
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In file included from /home/runner/work/_temp/Library/RcppEigen/include/Eigen/Core:19,
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from /home/runner/work/_temp/Library/RcppEigen/include/Eigen/Dense:1,
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from /home/runner/work/_temp/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,

dev/articles/loo2-example.html

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dev/articles/loo2-lfo.md

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[1] stats graphics grDevices utils datasets methods base
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other attached packages:
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[1] ggplot2_4.0.3 bayesplot_1.15.0 loo_2.10.0.9000 brms_2.23.0
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[1] ggplot2_4.0.3 bayesplot_1.15.0 loo_2.10.1.9000 brms_2.23.0
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[5] Rcpp_1.1.2 knitr_1.51
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loaded via a namespace (and not attached):
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[1] gtable_0.3.6 tensorA_0.36.2.1 xfun_0.60
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[4] bslib_0.11.0 QuickJSR_1.10.0 htmlwidgets_1.6.4
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[7] processx_3.9.0 inline_0.3.21 lattice_0.22-9
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[10] callr_3.8.0 ps_1.9.3 vctrs_0.7.3
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[13] tools_4.6.1 generics_0.1.4 stats4_4.6.1
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[16] parallel_4.6.1 tibble_3.3.1 pkgconfig_2.0.3
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[19] Matrix_1.7-5 checkmate_2.3.4 RColorBrewer_1.1-3
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[22] S7_0.2.2 desc_1.4.3 distributional_0.8.1
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[25] RcppParallel_5.1.11-2 lifecycle_1.0.5 compiler_4.6.1
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[28] farver_2.1.2 stringr_1.6.0 textshaping_1.0.5
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[31] Brobdingnag_1.2-9 codetools_0.2-20 htmltools_0.5.9
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[34] sass_0.4.10 yaml_2.3.12 pillar_1.11.1
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[37] pkgdown_2.2.1 jquerylib_0.1.4 cachem_1.1.0
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[40] StanHeaders_2.32.10 bridgesampling_1.2-1 abind_1.4-8
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[43] nlme_3.1-169 posterior_1.7.0 rstan_2.32.7
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[46] tidyselect_1.2.1 digest_0.6.39 mvtnorm_1.4-2
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[49] stringi_1.8.7 dplyr_1.2.1 labeling_0.4.3
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[52] fastmap_1.2.0 grid_4.6.1 cli_3.6.6
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[55] magrittr_2.0.5 pkgbuild_1.4.8 withr_3.0.3
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[58] scales_1.4.0 backports_1.5.1 rmarkdown_2.31
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[61] matrixStats_1.5.0 otel_0.2.0 gridExtra_2.3.1
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[64] ragg_1.5.2 coda_0.19-4.1 evaluate_1.0.5
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[67] rstantools_2.6.0 rlang_1.3.0 glue_1.8.1
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[70] jsonlite_2.0.0 R6_2.6.1 systemfonts_1.3.2
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[73] fs_2.1.0
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[1] gtable_0.3.6 tensorA_0.36.2.1 xfun_0.60
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[4] bslib_0.11.0 QuickJSR_1.10.0 htmlwidgets_1.6.4
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[7] processx_3.9.0 inline_0.3.21 lattice_0.22-9
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[10] callr_3.8.0 ps_1.9.3 vctrs_0.7.3
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[13] tools_4.6.1 generics_0.1.4 stats4_4.6.1
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[16] parallel_4.6.1 tibble_3.3.1 pkgconfig_2.0.3
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[19] Matrix_1.7-5 checkmate_2.3.4 RColorBrewer_1.1-3
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[22] S7_0.2.2 desc_1.4.3 distributional_0.8.1
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[25] RcppParallel_6.0.0 lifecycle_1.0.5 compiler_4.6.1
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[28] farver_2.1.2 stringr_1.6.0 textshaping_1.0.5
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[31] Brobdingnag_1.2-9 codetools_0.2-20 htmltools_0.5.9
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[34] sass_0.4.10 yaml_2.3.12 pillar_1.11.1
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[37] pkgdown_2.2.1 jquerylib_0.1.4 cachem_1.1.0
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[40] StanHeaders_2.32.10 bridgesampling_1.2-1 abind_1.4-8
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[43] nlme_3.1-169 posterior_1.7.0 rstan_2.32.7
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[46] tidyselect_1.2.1 digest_0.6.39 mvtnorm_1.4-2
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[49] stringi_1.8.7 dplyr_1.2.1 labeling_0.4.3
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[52] fastmap_1.2.0 grid_4.6.1 cli_3.6.6
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[55] magrittr_2.0.5 pkgbuild_1.4.8 withr_3.0.3
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[58] scales_1.4.0 backports_1.5.1 rmarkdown_2.31
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[61] matrixStats_1.5.0 otel_0.2.0 gridExtra_2.3.1
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[64] ragg_1.5.2 coda_0.19-4.1 evaluate_1.0.5
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[67] rstantools_2.6.0 rlang_1.3.0 glue_1.8.1
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[70] jsonlite_2.0.0 R6_2.6.1 systemfonts_1.3.2
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[73] fs_2.1.0
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### Appendix: Licenses
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dev/articles/loo2-mixis.html

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