Merge branch 'main' into add_small_e_prot

Author: zingale

.github/workflows/gh-pages.yml

@@ -10,6 +10,8 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v7
+        with:
+          fetch-depth: 0
 
       - name: Install pandoc and doxygen
         run: |

docs/source/conf.py

@@ -157,7 +157,8 @@
         "text": f"pyro {version}",
         "image_light": "logo.gif",
         "image_dark": "logo.gif",
-    }
+    },
+    "disable_search": True,
 }
 
 # Add any paths that contain custom static files (such as style sheets) here,

pyro/incompressible/simulation.py

@@ -427,7 +427,7 @@ def dovis(self):
             0.5*(u.ip(1) - u.ip(-1))/myg.dx + \
             0.5*(v.jp(1) - v.jp(-1))/myg.dy
 
-        _, axes = plt.subplots(nrows=2, ncols=2, num=1)
+        _, axes = plt.subplots(nrows=2, ncols=2, num=1, clear=True)
         plt.subplots_adjust(hspace=0.25)
 
         fields = [u, v, vort, divU]

pyro/lm_atm/simulation.py

@@ -643,7 +643,7 @@ def dovis(self):
 
         vort.v()[:, :] = dv - du
 
-        _, axes = plt.subplots(nrows=2, ncols=2, num=1)
+        _, axes = plt.subplots(nrows=2, ncols=2, num=1, clear=True)
         plt.subplots_adjust(hspace=0.25)
 
         fields = [rho, magvel, vort, rhoprime]

requirements.txt

@@ -10,7 +10,7 @@ pytest-cov>=2.6.0
 
 flake8>=3.5.0
 
-sphinx<8.2.0
+sphinx
 sphinx_book_theme
 sphinxcontrib-bibtex
 sphinx-math-dollar