diff --git a/_posts/2010-10-27-interface.textile b/_posts/2010-10-27-interface.textile index 709092e..8e029c6 100644 --- a/_posts/2010-10-27-interface.textile +++ b/_posts/2010-10-27-interface.textile @@ -77,7 +77,7 @@ h2. percolator [experimental]
--composition-matchRun an implementation of the Percolator-RESET psmsAndPeptides with target-decoy matching based on composition. -RT, --output-retention-timeAdd a retention time column to the output file. --irls-pepCalculate PEPs using a cubic spline fitted using penalized log-likelihood fitting as described in PMID:18689838. This used to be the default method. - [experimental]
--ip-pepUse scores instead of rank as independent variable when calculating PEPs. + --rank-pepUse rank instead of score as independent variable when calculating PEPs. [experimental]
--pava-pepCalculate PEPs using PAVA isotonic regression.