References

[andrewfagerheim]

2 June 2022

• WOCE Atlas: http://sam.ucsd.edu/whp_atlas/atlantic/sections.htm
• Physical Oceanography Textbook: https://www.sciencedirect.com/book/9780750645522/descriptive-physical-oceanography
• Physical Oceanography online resources: http://booksite.academicpress.com/DPO/index.php
• Intern Focusing Document: https://drive.google.com/file/d/147eBLlBalnJkygD398OWXmfsPiIl90pN/view

[andrewfagerheim]

3 June 2022

• ArgoPy: https://argopy.readthedocs.io/en/latest/index.html
• Pangeo Cloud application: https://docs.google.com/forms/d/e/1FAIpQLSeqKncKG-s365pC_Lfe4_UetJ-wcFfjOSyHhYYQjXbKRHzswQ/viewform
• ORCHiD: https://orcid.org/

[andrewfagerheim]

6 June 2022

• LDEO VPN setup: https://ldeo-it.ldeo.columbia.edu/content/vpn-virtual-private-network
• SSH connection, GitHub: https://docs.github.com/en/authentication/connecting-to-github-with-ssh/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent
• setting up Conda environments in Gyre: https://github.com/ocean-transport/guides/blob/master/personalizing_conda_on_gyre_sverdrup.md
• Useful commands in terminal: pwd (returns current directory), ls (see what files are present in current directory), cd (change directory)
• To create environment: use steps outlined in the environment set-up provided above (conda env create -f environment.yml). To edit environment: edit the environment file created, but substitute "create" for "update" in line typed into the terminal (conda env update -f environment.yml)
• TO COPY/PASTE IN TERMINAL, SHIFT + SELECT

[andrewfagerheim]

8 June 2022

GIT INFORMATION

• Git is designed to save relative changes between text files and allows you to see distinct points across a history of changes through "commits"
• Git is folder based: can branch off to develop a certain aspect of code, work on it independently from the main branch, then merge changes between them
• General workflow: commit changes after relevant progress points, push changes daily
• Useful commands: git status to see the status of various files, git add to add a file to the "changes to be committed" heading, git commit -m "Notes" to commit changes (pay attention to symbols, quotes, and apostrophes in notes), git push to push changes
• Revision commands: git log to see file hashes, git checkout to see either hashes or go back to main
• To pull changes from GitHub: git pull then Ctr+c then :q +enter, should change everything okay

[andrewfagerheim]

10 June 2022

• Comment on files in GitHub: https://www.reviewnb.com/
• Bash cheat sheet: https://devhints.io/bash
• Probably should take a look at this, about bias in PRES variable: https://argo.ucsd.edu/advice-on-pressure-biases-in-the-argo-data-set/
• EURO DASHBOARD: https://fleetmonitoring.euro-argo.eu/dashboard

[andrewfagerheim]

13 June 2022

• summary for Argo floats themselves, good for historical info, why things are setup a certain way, definition of terms, vertical sampling, etc https://www.frontiersin.org/articles/10.3389/fmars.2020.00700/full
• Data products derived from Argo floats, start with MIMOC and RG Climatology: https://argo.ucsd.edu/data/argo-data-products/
• Science done with Argo floats, special attention to Section 3 https://www.annualreviews.org/doi/abs/10.1146/annurev-marine-022521-102008
• Quantify lateral variability in the ocean from Argo floats https://agupubs.onlinelibrary.wiley.com/doi/full/10.1002/2015GL063827 https://journals.ametsoc.org/view/journals/phoc/45/7/jpo-d-14-0023.1.xml

[andrewfagerheim]

14 June 2022

• TEOS10: https://github.com/TEOS-10/GSW-Python
• Dhruv's RG climatology notebook: https://github.com/dhruvbalwada/sogos/blob/master/notebooks/notebooks_variability_paper/climatology_plot.ipynb
• xarray wrapper: https://github.com/DocOtak/gsw-xarray

[andrewfagerheim]

16 June 2022

• World Ocean Atlas (WOA): https://www.ncei.noaa.gov/products/world-ocean-atlas
• WOA climatology: https://ncsa.osn.xsede.org/Pangeo/pangeo-forge-test/prod/recipe-run-11/pangeo-forge/staged-recipes/woa18-1deg-monthly.zarr

[andrewfagerheim]

24 June 2022

THEOREMS:

• Plancherel Theorem: https://en.wikipedia.org/wiki/Plancherel_theorem
• Parseval's theorem: https://en.wikipedia.org/wiki/Parseval's_theorem
• Fourier transform video: https://www.youtube.com/watch?v=spUNpyF58BY

FILTERS:

• Convolution background info: https://en.wikipedia.org/wiki/Convolution
• Convolve in scipy: https://docs.scipy.org/doc/scipy/reference/generated/scipy.signal.convolve.html
• Bins/top hat in scipy: https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.binned_statistic.html?highlight=binned#scipy.stats.binned_statistic

[andrewfagerheim]

1 July 2022

• Approx formula for Gaussian filter scale: sigma = Lfilter/dx/np.sqrt(12)
• For the above, see: https://gcm-filters.readthedocs.io/en/latest/theory.html

[andrewfagerheim]

29 November 2022

Spectra/Filtering Connections

• Extracting the spectrum of a flow by spatial filtering: https://journals.aps.org/prfluids/pdf/10.1103/PhysRevFluids.3.124610
• Dhruv's notes: https://hackmd.io/J9R9Qx9CSRa1CAL09HFLSg

[dhruvbalwada]

Another one worth considering: https://arxiv.org/pdf/2212.07188.pdf

[dhruvbalwada]

Came across few potentially useful papers:

• https://link.springer.com/article/10.1007/s10236-018-1241-x
• https://journals.ametsoc.org/view/journals/phoc/7/4/1520-0485_1977_007_0626_anotlm_2_0_co_2.xml?tab_body=pdf
• https://royalsocietypublishing.org/doi/full/10.1098/rsta.2016.0324
• https://www.aviso.altimetry.fr/fileadmin/documents/OSTST/2010/oral/21_Thursday/afternoon/Scott.pdf