example.devcontainer.json

{
    "name": "PETPrep Development",
    "image": "ghcr.io/nipreps/petprep:main",
    "runArgs": [
        "--privileged"
    ],
    "mounts": [
        "source=/FullPath/to/the/data/directory/contaning/your/bids/data,target=/data,type=bind,consistency=cached",
        "source=/FullPath/to/your/freesurfer/license.txt,target=/opt/freesurfer/license.txt,type=bind,consistency=cached"
    ],
    "overrideCommand": true,
    "workspaceFolder": "/workspace",
    "workspaceMount": "source=${localWorkspaceFolder},target=/workspace,type=bind",
    "remoteUser": "petprep",
    "customizations": {
        "vscode": {
            "extensions": [
                "ms-python.python",
                "ms-python.debugpy",
                "ms-python.vscode-pylance",
                "charliermarsh.ruff",
                "ms-python.black-formatter"
            ],
            "settings": {
                "python.defaultInterpreterPath": "/opt/conda/envs/petprep/bin/python",
                "python.terminal.activateEnvironment": false,
                "python.linting.enabled": true,
                "python.linting.ruffEnabled": true,
                "python.formatting.provider": "black",
                "editor.formatOnSave": true,
                "files.eol": "\n"
            }
        }
    },
    "postCreateCommand": "bash -c 'cd /workspace && pip install --user --ignore-installed --no-cache-dir -e .[dev,test]'",
    "postStartCommand": "",
    "remoteEnv": {
        "PATH": "/home/petprep/.local/bin:/opt/conda/envs/petprep/bin:${containerEnv:PATH}",
        "PYTHONPATH": "/workspace:${containerEnv:PYTHONPATH}",
        "TEMPLATEFLOW_HOME": "/home/petprep/.cache/templateflow"
    }
}