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OpenApr 24, 2026
Overdue by 2 year(s)
•Due by February 29, 2024
•Last updated Milestones for v1.13.0 release of the pipeline
13% complete
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0 of 20 selected 0 issues of 20 selected
SRAtools download seems to insert paired-end suffix into workdir path
bugSomething isn't workingSomething isn't workingStatus: Open.#221 In nf-core/fetchngs;- Status: Draft (not ready).
- Status: Open (in progress).
- Status: Open (in progress).
- Status: Open (in progress).
Add compatibility with sarek samplesheet
enhancementImprovement for existing functionalityImprovement for existing functionalityStatus: Open.#196 In nf-core/fetchngs;Use nf-test for input validation
enhancementImprovement for existing functionalityImprovement for existing functionalityStatus: Open.#254 In nf-core/fetchngs;check out extensions for input files
bugSomething isn't workingSomething isn't workingStatus: Open.#256 In nf-core/fetchngs;1.11.0 works while 1.12.0 fails for apptainer+wget ( wget: unable to resolve host address 'ftp.sra.ebi.ac.uk' )
bugSomething isn't workingSomething isn't workingStatus: Open.#328 In nf-core/fetchngs;Incorrect MD5 checksums being used for some files
bugSomething isn't workingSomething isn't workingStatus: Open.#331 In nf-core/fetchngs;- Status: Open.#336 In nf-core/fetchngs;
Partition error on SLURM only with fetchngs -
bugSomething isn't workingSomething isn't workingStatus: Open.#343 In nf-core/fetchngs;ERROR ~ Error executing process > 'NFCORE_FETCHNGS:SRA:SRA_RUNINFO_TO_FTP (1)'
bugSomething isn't workingSomething isn't workingStatus: Open.#346 In nf-core/fetchngs;Check if running offline
enhancementImprovement for existing functionalityImprovement for existing functionalityStatus: Open.#18 In nf-core/fetchngs;wget host address error
bugSomething isn't workingSomething isn't workingStatus: Open.#291 In nf-core/fetchngs;SRA file links deprecated
bugSomething isn't workingSomething isn't workingStatus: Open.#301 In nf-core/fetchngs;Update some modeles for TES compliance
bugSomething isn't workingSomething isn't workingStatus: Open.#318 In nf-core/fetchngs;fasterq-dump => disk: local-ssd
enhancementImprovement for existing functionalityImprovement for existing functionalityStatus: Open.#332 In nf-core/fetchngs;- Status: Draft (not ready).
- Status: Draft (not ready).