diff --git a/.github/workflows/ci_pycopm_docker.yml b/.github/workflows/ci_pycopm_docker.yml index 0ae29f7..b4f8e04 100644 --- a/.github/workflows/ci_pycopm_docker.yml +++ b/.github/workflows/ci_pycopm_docker.yml @@ -9,13 +9,11 @@ jobs: run-pycopm-docker: permissions: contents: read - pull-requests: write timeout-minutes: 30 - runs-on: ubuntu-latest + runs-on: ubuntu-26.04 steps: - - name: Checkout repository - uses: actions/checkout@v4 + - uses: actions/checkout@v5 - name: Build Docker image run: docker build -t test-image . diff --git a/.github/workflows/ci_pycopm_macos.yml b/.github/workflows/ci_pycopm_macos.yml index 575cbb2..a0c7234 100644 --- a/.github/workflows/ci_pycopm_macos.yml +++ b/.github/workflows/ci_pycopm_macos.yml @@ -9,13 +9,11 @@ jobs: run-pycopm-macos: permissions: contents: read - pull-requests: write timeout-minutes: 90 - runs-on: macos-latest + runs-on: macos-26.04 steps: - - name: Checkout repository - uses: actions/checkout@v4 + - uses: actions/checkout@v5 - name: Install OPM Flow run: | @@ -23,13 +21,13 @@ jobs: brew trust cssr-tools/opm brew install cssr-tools/opm/opm-simulators -y - - name: Install python requirements + - name: Install pycopm and python requirements run: | python3 -m venv vpycopm . vpycopm/bin/activate echo "$PWD/vpycopm/bin" >> $GITHUB_PATH pip install --upgrade pip setuptools wheel - pip install -e . + pip install . pip install -r dev-requirements.txt - name: Run the hello world example in pycopm diff --git a/.github/workflows/ci_pycopm_ubuntu.yml b/.github/workflows/ci_pycopm_ubuntu.yml index 1e8bece..4cdc29d 100644 --- a/.github/workflows/ci_pycopm_ubuntu.yml +++ b/.github/workflows/ci_pycopm_ubuntu.yml @@ -7,36 +7,19 @@ jobs: run-pycopm-ubuntu: permissions: contents: read - pull-requests: write timeout-minutes: 30 - runs-on: ubuntu-24.04 - container: - image: ubuntu:26.04 + runs-on: ubuntu-26.04 steps: - - name: Checkout repository - uses: actions/checkout@v4 + - uses: actions/checkout@v5 - - name: Install system dependencies + - name: Install Flow Simulator and ert dependency run: | - apt-get update - DEBIAN_FRONTEND=noninteractive apt-get install -y \ - python3 python3-pip python3-venv \ - build-essential git curl ca-certificates \ - software-properties-common \ - octave \ - mpi-default-bin \ - freeglut3-dev \ - libhdf5-dev - - ln -s /usr/bin/python3 /usr/bin/python || true - - - name: Install Flow Simulator - run: | - apt-get update - apt-add-repository ppa:opm/ppa - apt-get update - DEBIAN_FRONTEND=noninteractive apt-get install -y libopm-simulators-bin + sudo apt-get update + sudo apt-get install software-properties-common mpi-default-bin libhdf5-dev freeglut3-dev + sudo apt-add-repository ppa:opm/ppa + sudo apt-get update + sudo apt-get install libopm-simulators-bin - name: Install python requirements run: | @@ -49,7 +32,7 @@ jobs: - name: Check code style and linting run: | - black --target-version py312 src/ tests/ --check + black --target-version py314 src/ tests/ --check pylint src/ tests/ mypy --ignore-missing-imports src/ tests/ @@ -74,4 +57,4 @@ jobs: - name: Build documentation run: | cd docs - make html + make html SPHINXOPTS="-W" diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 32b4db8..04bf91d 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -4,8 +4,8 @@ Contributions are more than welcome using the fork and pull request approach ## Ground Rules -- We use Black code formatting -- We use Pylint +- We use [_Black code formatting_](https://black.readthedocs.io/en/stable/) +- We use [_Pylint_](https://pylint.readthedocs.io/en/stable/) - We document our code ## Contribute to the software @@ -13,7 +13,7 @@ Contributions are more than welcome using the fork and pull request approach 1. Work on your own fork of the main repo 1. In the main repo execute: 1. **pip install -r dev-requirements.txt** (this installs the [_dev-requirements.txt_](https://github.com/cssr-tools/pycopm/blob/main/dev-requirements.txt)) - 1. **black --target-version py312 src/ tests/** (this formats the code) + 1. **black --target-version py314 src/ tests/** (this formats the code) 1. **pylint src/ tests/** (this analyses the code, and might rise issues that need to be fixed before the pull request) 1. **mypy --ignore-missing-imports src/ tests/** (this is a static checker, and might rise issues that need to be fixed before the pull request) 1. **pytest --cov=pycopm --cov-report term-missing --basetemp=test_outputs tests/ -n auto** (this runs locally the tests, and might rise issues that need to be fixed before the pull request) diff --git a/docs/_sources/contributing.rst.txt b/docs/_sources/contributing.rst.txt index eb99da3..59a50f1 100644 --- a/docs/_sources/contributing.rst.txt +++ b/docs/_sources/contributing.rst.txt @@ -22,17 +22,17 @@ Contribute to the software #. In the main repo execute: #. **pip install -r dev-requirements.txt** (this installs the `dev-requirements.txt `_) - #. **black --target-version py312 src/ tests/** (this formats the code) + #. **black \-\-target-version py314 src/ tests/** (this formats the code) #. **pylint src/ tests/** (this analyses the code, and might rise issues that need to be fixed before the pull request) - #. **mypy --ignore-missing-imports src/ tests/** (this is a static checker, and might rise issues that need to be fixed before the pull request) - #. **pytest --cov=pycopm --cov-report term-missing --basetemp=test_outputs tests/ -n auto** (this runs locally the tests, and might rise issues that need to be fixed before the pull request) + #. **mypy \-\-ignore-missing-imports src/ tests/** (this is a static checker, and might rise issues that need to be fixed before the pull request) + #. **pytest \-\-cov=pycopm \-\-cov-report term-missing \-\-basetemp=test_outputs tests/ -n auto** (this runs locally the tests, and might rise issues that need to be fixed before the pull request) #. **pycopm -i examples/decks/HELLO_WORLD.DATA -c 5,5,1 -m all -o output** (this runs the hello world example, which succeeds if the file output/HELLO_WORLD_PYCOPM.EGRID is created) #. **pushd docs & make html** (this generates the documentation, and might rise issues that need to be fixed before the pull request; if the build succeeds and if the contribution changes the documentation, then copy all content from the docs/_build/html/ folder and replace the files in the `docs `_ folder) .. tip:: See the `ci_pycopm_ubuntu.yml `_ script and the `Actions `_ for installation of pycopm, OPM Flow (binary packages), and dependencies, as well as the execution of the seven previous steps in Ubuntu 26.04 using Python 3.14. For macOS users, see the `ci_pycopm_macos.yml `_ script and the `OPM-Flow_macOS Actions `_ for installation of pycopm, OPM Flow (source build), and dependencies, as well as running the tests and the hello world example in macOS 26 using Python3.14. - Note that if you do not add the directory containing the OPM Flow executable to your system's PATH environment variable (e.g., export PATH=$PATH:/Users/yourname/pycopm/build/opm-simulators/bin), then you can pass this in the execution of the tests and pycopm using the flags **-f/--flow** (see `this script `_). + Note that if you do not add the directory containing the OPM Flow executable to your system's PATH environment variable (e.g., export PATH=$PATH:/Users/yourname/pycopm/build/opm-simulators/bin), then you can pass this in the execution of the tests and pycopm using the flags **-f/\-\-flow** (see `this script `_). #. Squash your commits into a single commit (see this `nice tutorial `_ if you are not familiar with this) #. Push your commit and make a pull request diff --git a/docs/_sources/examples.rst.txt b/docs/_sources/examples.rst.txt index e2ff08d..573cd51 100644 --- a/docs/_sources/examples.rst.txt +++ b/docs/_sources/examples.rst.txt @@ -12,7 +12,9 @@ For additional examples demonstrating the applicability of **pycopm**, see the ` .. code-block:: bash - brew install cssr-tools/opm/resinsight + brew tap cssr-tools/opm + brew trust cssr-tools/opm + brew install cssr-tools/opm/resinsight -y Then, you should be able to open resinsight by typing in the terminal **resinsight**. If you have issues installing ResInsight, `ParaView `_ can be also used. However, you need to add the flag **\-\-enable-vtk-output=true** to OPM Flow. diff --git a/docs/_sources/installation.rst.txt b/docs/_sources/installation.rst.txt index fa057dd..b64e284 100644 --- a/docs/_sources/installation.rst.txt +++ b/docs/_sources/installation.rst.txt @@ -78,7 +78,7 @@ supported either via source builds or through running a virtual machine. .. tip:: See the `ci_pycopm_ubuntu.yml `_ script - for installation of OPM Flow (binary packages) and the pycopm package in Ubuntu. + for installation of OPM Flow (binary packages) and the pycopm package in Ubuntu 26.04 and Python 3.14. Source build in Linux/Windows +++++++++++++++++++++++++++++ @@ -116,11 +116,13 @@ Brew formula for macOS ++++++++++++++++++++++ For macOS, there are no available binary packages, so OPM Flow needs to be built from source. Recently, a formula to build flow using brew has been added in `https://github.com/cssr-tools/homebrew-opm `_. -Then, you can try to install flow (v2026.02) by simply typing: +Then, you can try to install flow (v2026.07 interim release) by simply typing: .. code-block:: console - brew install cssr-tools/opm/opm-simulators + brew tap cssr-tools/opm + brew trust cssr-tools/opm + brew install cssr-tools/opm/opm-simulators -y You can check if the installation of OPM Flow succeded by typing in the terminal **flow \-\-help**. @@ -129,4 +131,4 @@ You can check if the installation of OPM Flow succeded by typing in the terminal Source build in macOS +++++++++++++++++++++ -See `this repository `_ dedicated to build OPM Flow from source in the latest macOS (GitHub actions), and tested with **pycopm** +See `this repository `_ dedicated to build OPM Flow from source in macOS 26 (GitHub actions), and tested with **pycopm** diff --git a/docs/contributing.html b/docs/contributing.html index dd01102..06ce9ec 100644 --- a/docs/contributing.html +++ b/docs/contributing.html @@ -108,7 +108,7 @@

Contribute to the software

  • pip install -r dev-requirements.txt (this installs the dev-requirements.txt)

    • -

  • black --target-version py312 src/ tests/ (this formats the code)

    • +

  • black --target-version py314 src/ tests/ (this formats the code)

  • pylint src/ tests/ (this analyses the code, and might rise issues that need to be fixed before the pull request)

  • mypy --ignore-missing-imports src/ tests/ (this is a static checker, and might rise issues that need to be fixed before the pull request)

  • pytest --cov=pycopm --cov-report term-missing --basetemp=test_outputs tests/ -n auto (this runs locally the tests, and might rise issues that need to be fixed before the pull request)

    • diff --git a/docs/examples.html b/docs/examples.html index c0a9632..be715d7 100644 --- a/docs/examples.html +++ b/docs/examples.html @@ -101,7 +101,9 @@

    Examples

    Note

    There are binary packages for Linux and Windows to install Resinsight, see the ResInsight Documentation. For macOS users, you could try to install it using brew by executing:

    -
    brew install cssr-tools/opm/resinsight
+
    brew tap cssr-tools/opm
+brew trust cssr-tools/opm
+brew install cssr-tools/opm/resinsight -y
 
    
 
    
 
    Then, you should be able to open resinsight by typing in the terminal resinsight. If you have issues installing ResInsight, ParaView can be also used. However, you need to add the flag --enable-vtk-output=true
diff --git a/docs/installation.html b/docs/installation.html
index 8cf79bd..510ac38 100644
--- a/docs/installation.html
+++ b/docs/installation.html
@@ -156,7 +156,7 @@ 
    Binary packages
 
    Tip
    
 
    See the ci_pycopm_ubuntu.yml script
-for installation of OPM Flow (binary packages) and the pycopm package in Ubuntu.
    
+for installation of OPM Flow (binary packages) and the pycopm package in Ubuntu 26.04 and Python 3.14.
    @@ -191,8 +191,10 @@

    Source build in Linux/Windows

    Brew formula for macOS

    For macOS, there are no available binary packages, so OPM Flow needs to be built from source. Recently, a formula to build flow using brew has been added in https://github.com/cssr-tools/homebrew-opm. -Then, you can try to install flow (v2026.02) by simply typing:

    -
    brew install cssr-tools/opm/opm-simulators
+Then, you can try to install flow (v2026.07 interim release) by simply typing:
    
+
    brew tap cssr-tools/opm
+brew trust cssr-tools/opm
+brew install cssr-tools/opm/opm-simulators -y
 
    
 
    
 
    You can check if the installation of OPM Flow succeded by typing in the terminal flow --help.
    
@@ -203,7 +205,7 @@ 
    Source build in Linux/Windows
 
    Source build in macOS
    
-
    See this repository dedicated to build OPM Flow from source in the latest macOS (GitHub actions), and tested with pycopm
    
+
    See this repository dedicated to build OPM Flow from source in macOS 26 (GitHub actions), and tested with pycopm

    diff --git a/docs/pycopm.utils.mapping_methods.html b/docs/pycopm.utils.mapping_methods.html index b56bbda..217b64c 100644 --- a/docs/pycopm.utils.mapping_methods.html +++ b/docs/pycopm.utils.mapping_methods.html @@ -181,12 +181,6 @@
    pycopm.utils.mapping_methods.handle_dual(dic)

    Create the dual grid by extending it in the j-direction

    -
    -
    Args:

    dic (dict): Global dictionary

    -
    -
    Returns:

    dic (dict): Modified global dictionary

    -
    -
    diff --git a/docs/searchindex.js b/docs/searchindex.js index cbf19ed..0eabdb1 100644 --- a/docs/searchindex.js +++ b/docs/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles":{"About pycopm":[[0,null]],"Binary packages":[[6,"binary-packages"]],"Brew formula for macOS":[[6,"brew-formula-for-macos"]],"Concept":[[7,"concept"]],"Configuration file":[[2,null]],"Contribute to the software":[[3,"contribute-to-the-software"]],"Contributing":[[3,null]],"Drogon":[[4,"drogon"]],"Dual coarsening":[[4,"dual-coarsening"]],"Examples":[[4,null]],"Graphical abstract":[[4,"graphical-abstract"]],"Grid coarsening":[[23,"grid-coarsening"]],"Grid refinement":[[23,"grid-refinement"]],"Ground Rules":[[3,"ground-rules"]],"Hello world":[[4,"hello-world"]],"Indices and tables":[[5,"indices-and-tables"]],"Installation":[[6,null]],"Introduction":[[7,null]],"Module contents":[[10,"module-pycopm"],[11,"module-pycopm.core"],[13,"module-pycopm.utils"]],"Norne":[[4,"norne"]],"OPM Flow":[[6,"opm-flow"]],"Output 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\ No newline at end of file diff --git a/docs/text/contributing.rst b/docs/text/contributing.rst index 28628ef..59a50f1 100644 --- a/docs/text/contributing.rst +++ b/docs/text/contributing.rst @@ -22,7 +22,7 @@ Contribute to the software #. In the main repo execute: #. **pip install -r dev-requirements.txt** (this installs the `dev-requirements.txt `_) - #. **black \-\-target-version py312 src/ tests/** (this formats the code) + #. **black \-\-target-version py314 src/ tests/** (this formats the code) #. **pylint src/ tests/** (this analyses the code, and might rise issues that need to be fixed before the pull request) #. **mypy \-\-ignore-missing-imports src/ tests/** (this is a static checker, and might rise issues that need to be fixed before the pull request) #. **pytest \-\-cov=pycopm \-\-cov-report term-missing \-\-basetemp=test_outputs tests/ -n auto** (this runs locally the tests, and might rise issues that need to be fixed before the pull request) diff --git a/docs/text/examples.rst b/docs/text/examples.rst index e2ff08d..573cd51 100644 --- a/docs/text/examples.rst +++ b/docs/text/examples.rst @@ -12,7 +12,9 @@ For additional examples demonstrating the applicability of **pycopm**, see the ` .. code-block:: bash - brew install cssr-tools/opm/resinsight + brew tap cssr-tools/opm + brew trust cssr-tools/opm + brew install cssr-tools/opm/resinsight -y Then, you should be able to open resinsight by typing in the terminal **resinsight**. If you have issues installing ResInsight, `ParaView `_ can be also used. However, you need to add the flag **\-\-enable-vtk-output=true** to OPM Flow. diff --git a/docs/text/installation.rst b/docs/text/installation.rst index fa057dd..b64e284 100644 --- a/docs/text/installation.rst +++ b/docs/text/installation.rst @@ -78,7 +78,7 @@ supported either via source builds or through running a virtual machine. .. tip:: See the `ci_pycopm_ubuntu.yml `_ script - for installation of OPM Flow (binary packages) and the pycopm package in Ubuntu. + for installation of OPM Flow (binary packages) and the pycopm package in Ubuntu 26.04 and Python 3.14. Source build in Linux/Windows +++++++++++++++++++++++++++++ @@ -116,11 +116,13 @@ Brew formula for macOS ++++++++++++++++++++++ For macOS, there are no available binary packages, so OPM Flow needs to be built from source. Recently, a formula to build flow using brew has been added in `https://github.com/cssr-tools/homebrew-opm `_. -Then, you can try to install flow (v2026.02) by simply typing: +Then, you can try to install flow (v2026.07 interim release) by simply typing: .. code-block:: console - brew install cssr-tools/opm/opm-simulators + brew tap cssr-tools/opm + brew trust cssr-tools/opm + brew install cssr-tools/opm/opm-simulators -y You can check if the installation of OPM Flow succeded by typing in the terminal **flow \-\-help**. @@ -129,4 +131,4 @@ You can check if the installation of OPM Flow succeded by typing in the terminal Source build in macOS +++++++++++++++++++++ -See `this repository `_ dedicated to build OPM Flow from source in the latest macOS (GitHub actions), and tested with **pycopm** +See `this repository `_ dedicated to build OPM Flow from source in macOS 26 (GitHub actions), and tested with **pycopm** diff --git a/src/pycopm/core/pycopm.py b/src/pycopm/core/pycopm.py index eefe860..89d65c1 100644 --- a/src/pycopm/core/pycopm.py +++ b/src/pycopm/core/pycopm.py @@ -411,7 +411,7 @@ def check_cmdargs(cmdargs): != 0 ): raise RuntimeError - except (FileNotFoundError, RuntimeError): + except FileNotFoundError, RuntimeError: print( f"\nThe OPM flow executable '-f {' '.join(cmd)}' is not available or not working.\n" )