Bug fixes for dual porosity #98

	name: Ubuntu

	on:
	pull_request:

	jobs:
	run-pycopm-ubuntu:
	permissions:
	contents: read
	pull-requests: write
	timeout-minutes: 30
	runs-on: ubuntu-24.04
	container:
	image: ubuntu:26.04

	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: Install system dependencies
	run: \|
	apt-get update
	DEBIAN_FRONTEND=noninteractive apt-get install -y \
	python3 python3-pip python3-venv \
	build-essential git curl ca-certificates \
	software-properties-common \
	octave \
	mpi-default-bin \
	freeglut3-dev \
	libhdf5-dev

	ln -s /usr/bin/python3 /usr/bin/python \|\| true

	- name: Install Flow Simulator
	run: \|
	apt-get update
	apt-add-repository ppa:opm/ppa
	apt-get update
	DEBIAN_FRONTEND=noninteractive apt-get install -y libopm-simulators-bin

	- name: Install python requirements
	run: \|
	python3 -m venv vpycopm
	. vpycopm/bin/activate
	echo "$PWD/vpycopm/bin" >> $GITHUB_PATH
	pip install --upgrade pip setuptools wheel
	pip install -e .
	pip install -r dev-requirements.txt

	- name: Check code style and linting
	run: \|
	black --target-version py312 src/ tests/ --check
	pylint src/ tests/
	mypy --ignore-missing-imports src/ tests/

	- name: Run tests
	run: \|
	pytest --cov=pycopm --cov-report term-missing --basetemp=test_outputs tests/ --exitfirst

	- name: Run hello world example
	run: \|
	pycopm -i examples/decks/HELLO_WORLD.DATA -c 5,5,1 -m all -o output

	- name: Check if hello world example succeded
	run: \|
	file="output/HELLO_WORLD_PYCOPM.EGRID"
	if [ -f "$file" ]; then
	echo "pycopm succeeded"
	else
	echo "pycopm failed"
	exit 1
	fi

	- name: Build documentation
	run: \|
	cd docs
	make html

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