bids-specification/src/schema/rules/tabular_data/modality_agnostic.yaml at d7d060dfb3973b48213d32d42b6d823844ddc3ee · bids-standard/bids-specification · GitHub

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---
Participants:
  selectors:
    - path == "/participants.tsv"
  initial_columns:
    - participant_id
  columns:
    participant_id:
      level: required
      description_addendum: |
        There MUST be exactly one row for each participant.
    species: recommended
    age: recommended
    sex: recommended
    handedness: recommended
    strain: recommended
    strain_rrid: recommended
    birthdate: optional
    birthtime: optional
    deathdate: optional
    deathtime: optional
    age_category: optional
    HED: optional
  index_columns: [participant_id]
  additional_columns: allowed

Samples:
  selectors:
    - path == "/samples.tsv"
  columns:
    sample_id: required
    participant_id: required
    sample_type: required
    pathology: recommended
    derived_from: recommended
  index_columns: [sample_id, participant_id]
  additional_columns: allowed

Scans:
  selectors:
    - suffix == "scans"
    - extension == ".tsv"
  initial_columns:
    - filename
  columns:
    filename:
      level: required
      description_addendum: |
        There MUST be exactly one row for each file.
    acq_time__scans: optional
    HED: optional
  index_columns: [filename]
  additional_columns: allowed

Sessions:
  selectors:
    - suffix == "sessions"
    - extension == ".tsv"
  initial_columns:
    - session_id
  columns:
    session_id:
      level: required
      description_addendum: |
        There MUST be exactly one row for each session.
    acq_time__sessions: optional
    pathology: recommended
    HED: optional
  index_columns: [session_id]
  additional_columns: allowed

Phenotype:
  selectors:
    - datatype == 'phenotype'
  initial_columns:
    - participant_id
  columns:
    participant_id: required
    HED: optional
  index_columns: [participant_id]
  additional_columns: allowed