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columns.yaml
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---
HED:
name: HED
display_name: HED
description: |
Hierarchical Event Descriptor (HED) tags.
See the [HED Appendix](SPEC_ROOT/appendices/hed.md) for details.
type: string
abbreviation:
name: abbreviation
display_name: Abbreviation
description: |
The unique label abbreviation
type: string
acq_time__scans:
name: acq_time
display_name: Scan acquisition time
description: |
Acquisition time refers to when the first data point in each run was acquired.
Furthermore, if this header is provided, the acquisition times of all files
from the same recording MUST be identical.
Datetime format and their deidentification are described in
[Units](SPEC_ROOT/common-principles.md#units).
type: string
format: datetime
acq_time__sessions:
name: acq_time
display_name: Session acquisition time
description: |
Acquisition time refers to when the first data point of the first run was acquired.
Datetime format and their deidentification are described in
[Units](SPEC_ROOT/common-principles.md#units).
type: string
format: datetime
age:
name: age
display_name: Subject age
description: |
Numeric value in years (float or integer value).
For privacy purposes, participant ages should be capped at 89.
Using "89+" for ages above 88 is DEPRECATED.
definition: {
"LongName": "Subject age",
"Description": "Subject age in postnatal years",
"Format": "number",
"Units": "year",
"Maximum": 89,
}
age_category:
name: age_category
display_name: Age category
description: |
A non-numeric term for a subject's life cycle stage (for instance, `adult`).
Inspired by the
[UBERON life cycle stage](http://purl.obolibrary.org/obo/UBERON_0000105).
type: string
enum:
- $ref: objects.enums.adolescent.value
- $ref: objects.enums.adult.value
- $ref: objects.enums.embryo.value
- $ref: objects.enums.infant.value
- $ref: objects.enums.juvenile.value
- $ref: objects.enums.late_adult.value
- $ref: objects.enums.neonate.value
- $ref: objects.enums.perinate.value
- $ref: objects.enums.prime_adult.value
- $ref: objects.enums.young_adult.value
birthdate:
name: birthdate
display_name: Birth date
description: |
Date of the start of a subject's neonate stage. Date format (YYYY-MM-DD).
Should not be provided or anonymized for human subjects.
type: string
format: date
birthtime:
name: birthtime
display_name: Birth time
description: |
Time (or estimated time) of birth. Time format (hh:mm:ssZ).
Typically, this field will be combined with birthdate.
Should not be provided or anonymized for human subjects.
type: string
format: time
cardiac:
name: cardiac
display_name: Cardiac measurement
description: |
continuous pulse measurement
definition: {
"Description": "continuous pulse measurement",
"Format": "number",
"Units": "mV"
}
channel:
name: channel
display_name: Channel
description: |
Channel(s) associated with an event.
If multiple channels are specified, they MUST be separated by a delimiter
specified in the `"Delimiter"` field describing the `channel` column.
For example, channels separated with a comma (`,`) require the `events.json`
file to contain `"channel": {"Delimiter": ","}`.
In the absence of a delimiter, tools MUST interpret any character as being part
of a channel name.
type: string
color:
name: color
display_name: Color label
description: |
Hexadecimal. Label color for visualization.
type: string
unit: hexadecimal
component:
name: component
display_name: Component
description: |
Description of the spatial axis or label of quaternion component associated with the channel.
For example, `x`,`y`,`z` for position channels,
or `quat_x`, `quat_y`, `quat_z`, `quat_w` for quaternion orientation channels.
type: string
enum:
- $ref: objects.enums.x.value
- $ref: objects.enums.y.value
- $ref: objects.enums.z.value
- $ref: objects.enums.quat_x.value
- $ref: objects.enums.quat_y.value
- $ref: objects.enums.quat_z.value
- $ref: objects.enums.quat_w.value
coordinate_system:
name: coordinate_system
display_name: Coordinate System
description: |
Name of the coordinate system defined in `coordsystem.json` in which the electrode's
`x`, `y`, and (optionally) `z` coordinates are given.
type: string
deathdate:
name: deathdate
display_name: Death date
description: |
Date of the end of a subject's life cycle. Date format (YYYY-MM-DD).
Should not be provided or anonymized for human subjects.
type: string
format: date
deathtime:
name: deathtime
display_name: Death time
description: |
Time (or estimated time) of death. Time format (hh:mm:ssZ).
Typically, this field will be combined with deathdate.
Should not be provided or anonymized for human subjects.
type: string
format: time
detector__channels:
name: detector
display_name: Detector Name
description: |
Name of the detector as specified in the `*_optodes.tsv` file.
`n/a` for channels that do not contain NIRS signals (for example, acceleration).
type: string
detector_type:
name: detector_type
display_name: Detector Type
description: |
The type of detector. Only to be used if the field `DetectorType` in `*_nirs.json` is set to `mixed`.
type: string
derived_from:
name: derived_from
display_name: Derived from
description: |
`sample-<label>` entity from which a sample is derived,
for example a slice of tissue (`sample-02`) derived from a block of tissue (`sample-01`).
type: string
pattern: ^sample-[0-9a-zA-Z+]+$
desc_id:
name: desc_id
display_name: Description Label
description: |
A `desc-<label>` entity present in the derivatives dataset.
The `desc_id` column contains the labels used with the
[`desc` entity](SPEC_ROOT/appendices/entities.md#desc),
within the particular nesting that the `descriptions.tsv` file is placed.
For example, if the `descriptions.tsv` file is placed at the root of the derivative dataset,
its `desc_id` column SHOULD contain all labels of the `desc` entity)
used across the entire derivative dataset.
type: string
pattern: ^desc-[0-9a-zA-Z+]+$
description:
name: description
display_name: Description
description: |
Brief free-text description of the channel, or other information of interest.
type: string
description__optode:
name: description
display_name: Description
description: |
Free-form text description of the optode, or other information of interest.
type: string
description__entities:
name: description
display_name: Description
description: |
Free-form text description of the entity's label (defined in `<entity>_id` column).
type: string
dimension:
name: dimension
display_name: Dimension
description: |
Size of the group (grid/strip/probe) that this electrode belongs to.
Must be of form `[AxB]` with the smallest dimension first (for example, `[1x8]`).
type: string
duration:
name: duration
display_name: Event duration
description: |
Duration of the event (measured from onset) in seconds.
Must always be either zero or positive (or `n/a` if unavailable).
A "duration" value of zero implies that the delta function or event is so
short as to be effectively modeled as an impulse.
type: number
unit: s
minimum: 0
x_coordinate:
name: x_coordinate
display_name: Gaze x-coordinate
description: |
Gaze position x-coordinate of the recorded eye, in the coordinate
units specified in the corresponding metadata sidecar.
type: number
y_coordinate:
name: y_coordinate
display_name: Gaze y-coordinate
description: |
Gaze position y-coordinate of the recorded eye, in the coordinate
units specified in the corresponding metadata sidecar.
type: number
pupil_size:
name: pupil_size
display_name: Pupil size
description: |
Pupil size, as area or diameter, of the recorded eye, in the
units specified in the corresponding metadata sidecar.
It is RECOMMENDED to indicate the particular type of pupil size that is
being recorded in the `Description` field of this column.
It is RECOMMENDED to specify the `Units` field corresponding to this column.
type: number
timestamp__eyetrack:
name: timestamp
display_name: Eye-tracking recording timestamp
description: |
Timestamp issued by the eye-tracker indexing the continuous recordings corresponding to
the sampled eye.
type: number
filename:
name: filename
display_name: Filename
description: |
Relative paths to files.
type: string
format: participant_relative
group__channel:
name: group
display_name: Channel group
description: |
Which group of channels (grid/strip/seeg/depth) this channel belongs to.
This is relevant because one group has one cable-bundle and noise can be shared.
This can be a name or number.
type: string
group__emg:
name: group
display_name: Electrode or channel group
description: |
Which group the electrode or channel belongs to (typically this indicates electrodes
or bipolar channels on the same grid, strip, or other device).
anyOf:
- type: string
- type: number
handedness:
name: handedness
display_name: Subject handedness
definition: {
"LongName": "Subject handedness",
"Description": "String value indicating one of \"left\", \"right\", or \"ambidextrous\".",
"Format": "string",
"Levels": {
"left": "Left-handed",
"l": "Left-handed",
"L": "Left-handed",
"LEFT": "Left-handed",
"Left": "Left-handed",
"right": "Right-handed",
"r": "Right-handed",
"R": "Right-handed",
"RIGHT": "Right-handed",
"Right": "Right-handed",
"ambidextrous": "Ambidextrous",
"a": "Ambidextrous",
"A": "Ambidextrous",
"AMBIDEXTROUS": "Ambidextrous",
"Ambidextrous": "Ambidextrous",
}
}
description: |
String value indicating one of "left", "right", "ambidextrous".
For "left", use one of these values: `left`, `l`, `L`, `LEFT`, `Left`.
For "right", use one of these values: `right`, `r`, `R`, `RIGHT`, `Right`.
For "ambidextrous", use one of these values: `ambidextrous`, `a`, `A`, `AMBIDEXTROUS`,
`Ambidextrous`.
hemisphere:
name: hemisphere
display_name: Electrode hemisphere
description: |
The hemisphere in which the electrode is placed.
type: string
enum:
- $ref: objects.enums.left_hemisphere.value
- $ref: objects.enums.right_hemisphere.value
high_cutoff:
name: high_cutoff
display_name: High cutoff
description: |
Frequencies used for the low-pass filter applied to the channel in Hz.
If no low-pass filter applied, use `n/a`.
Note that hardware anti-aliasing in A/D conversion of all MEG/EEG/EMG electronics
applies a low-pass filter; specify its frequency here if applicable.
type: number
unit: Hz
minimum: 0
hplc_recovery_fractions:
name: hplc_recovery_fractions
display_name: HPLC recovery fractions
description: |
HPLC recovery fractions (the fraction of activity that gets loaded onto the HPLC).
type: number
unit: arbitrary
impedance:
name: impedance
display_name: Electrode impedance
description: |
Impedance of the electrode, units MUST be in `kOhm`.
type: number
unit: kOhm
index:
name: index
display_name: Label index
description: |
The label integer index.
type: integer
interelectrode_distance:
name: interelectrode_distance
display_name: Interelectrode Distance
description: |
Distance between adjacent electrodes (in a pair or grid) that are rigidly attached to
the same sensor device, or between the `signal_electrode` and its `reference`
when each is independently placed.
type: number
unit: mm
low_cutoff:
name: low_cutoff
display_name: Low cutoff
description: |
Frequencies used for the high-pass filter applied to the channel in Hz.
If no high-pass filter applied, use `n/a`.
type: number
unit: Hz
manufacturer:
name: manufacturer
display_name: Manufacturer
description: |
The manufacturer for each electrode.
Can be used if electrodes were manufactured by more than one company.
type: string
mapping:
name: mapping
display_name: Label mapping
description: |
Corresponding integer label in the standard BIDS label lookup.
type: integer
message:
name: message
display_name: Message
description: |
Brief free-text description of a message (for example in a log generated
by a device), or other information of interest.
type: string
material:
name: material
display_name: Electrode material
description: |
Material of the electrode (for example, `Tin`, `Ag/AgCl`, `Gold`).
type: string
metabolite_parent_fraction:
name: metabolite_parent_fraction
display_name: Metabolite parent fraction
description: |
Parent fraction of the radiotracer (0-1).
type: number
minimum: 0
maximum: 1
metabolite_polar_fraction:
name: metabolite_polar_fraction
display_name: Metabolite polar fraction
description: |
Polar metabolite fraction of the radiotracer (0-1).
type: number
minimum: 0
maximum: 1
# name column for channels.tsv files
name__channels:
name: name
display_name: Channel name
description: |
Label of the channel.
type: string
# name column for electrodes.tsv files
name__electrodes:
name: name
display_name: Electrode name
description: |
Name of the electrode contact point.
type: string
name__optodes:
name: name
display_name: Optode name
description: |
Name of the optode, must be unique.
type: string
# name column for dseg.tsv files
name__segmentations:
name: name
display_name: Label name
description: |
The unique label name.
type: string
notch:
name: notch
display_name: Notch frequencies
description: |
Frequencies used for the notch filter applied to the channel, in Hz.
If notch filters are applied at multiple frequencies,
these frequencies MAY be specified as a list,
for example, `[60, 120, 180]`.
If no notch filter was applied, use `n/a`.
type: string
onset:
name: onset
display_name: Event onset
description: |
Onset (in seconds) of the event, measured from the beginning of the acquisition
of the first data point stored in the corresponding task data file.
Negative onsets are allowed, to account for events that occur prior to the first
stored data point.
For example, in case there is an in-scanner training phase that begins before
the scanning sequence has started events from this sequence should have
negative onset time counting down to the beginning of the acquisition of the
first volume.
If any data points have been discarded before forming the data file
(for example, "dummy volumes" in BOLD fMRI),
a time of 0 corresponds to the first stored data point and not the first
acquired data point.
A value of `n/a` value indicates the onset time is unknown or unavailable.
type: number
unit: s
pathology:
name: pathology
display_name: Pathology
description: |
String value describing the pathology of the sample or type of control.
When different from `healthy`, pathology SHOULD be specified.
The pathology may be specified in either `samples.tsv` or
`sessions.tsv`, depending on whether the pathology changes over time.
definition: {
"Description": "Description of the pathology of the sample or type of control.",
"Format": "string",
}
participant_id:
name: participant_id
display_name: Participant ID
description: |
A participant identifier of the form `sub-<label>`,
matching a participant entity found in the dataset.
type: string
pattern: ^sub-[0-9a-zA-Z+]+$
onset__physioevents:
name: onset
display_name: Onset of events in physiological recordings
description: |
Onset of the event relative to the timeline defined by the corresponding
physiological recording file.
Typically, it will correspond to a timestamp issued by the recording device.
type: number
placement_description:
name: placement_description
display_name: Placement Scheme Description
description: |
Additional details of the approach to EMG sensor placement.
See description of the `EMGPlacementSchemeDescription` field in `*_emg.json`.
type: string
placement_scheme:
name: placement_scheme
display_name: Placement Scheme
description: |
A description of the electrode placement procedure used.
See description of the `EMGPlacementScheme` field in `*_emg.json`.
type: string
enum:
- measured
- other
placement__motion:
name: placement
display_name: Placement
description: |
Placement of the tracked point on the body (for example,
participant, avatar centroid, torso, left arm).
It can refer to an external vocabulary for describing body parts.
type: string
plasma_radioactivity:
name: plasma_radioactivity
display_name: Plasma radioactivity
description: |
Radioactivity in plasma, in unit of plasma radioactivity (for example, `kBq/mL`).
type: number
# reference column for channels.tsv files for EEG data
reference__eeg:
name: reference
display_name: Electrode reference
description: |
Name of the reference electrode(s).
This column is not needed when it is common to all channels.
In that case the reference electrode(s) can be specified in `*_eeg.json` as `EEGReference`).
type: string
# reference column for channels.tsv files for EMG data
reference__emg:
name: reference
display_name: Reference electrode
description: |
The reference for the given channel.
When the reference is an electrode in `*_electrodes.tsv`, use the name of that electrode.
For channels originating from bipolar devices, use `"bipolar"`.
For non-EMG channels (for example, trigger channels, microphones) use `"n/a"`.
type: string
# reference column for channels.tsv files for iEEG data
reference__ieeg:
name: reference
display_name: Electrode reference
description: |
Specification of the reference (for example, `mastoid`, `ElectrodeName01`, `intracranial`, `CAR`, `other`, `n/a`).
If the channel is not an electrode channel (for example, a microphone channel) use `n/a`.
type: string
reference_frame:
name: reference_frame
display_name: Reference frame
description: |
Specification of a reference frame in which the motion data are to be interpreted.
The description of the levels in `*_channels.json` SHOULD use `RotationRule`,
`RotationOrder`, and `SpatialAxes`, and MAY use `Description` for the specification.
type: string
respiratory:
name: respiratory
display_name: Respiratory measurement
description: |
continuous breathing measurement
definition: {
"Description": "continuous measurements by respiration belt",
"Format": "number",
"Units": "mV"
}
response_time:
name: response_time
display_name: Response time
description: |
Response time measured in seconds.
A negative response time can be used to represent preemptive responses and
`n/a` denotes a missed response.
type: number
unit: s
sample_id:
name: sample_id
display_name: Sample ID
description: |
A sample identifier of the form `sample-<label>`,
matching a sample entity found in the dataset.
type: string
pattern: ^sample-[0-9a-zA-Z+]+$
sample_type:
name: sample_type
display_name: Sample type
description: |
Biosample type defined by
[ENCODE Biosample Type](https://www.encodeproject.org/profiles/biosample_type).
type: string
enum:
- $ref: objects.enums.cell_line.value
- $ref: objects.enums.in_vitro_differentiated_cells.value
- $ref: objects.enums.primary_cell.value
- $ref: objects.enums.cell_free_sample.value
- $ref: objects.enums.cloning_host.value
- $ref: objects.enums.tissue.value
- $ref: objects.enums.whole_organisms.value
- $ref: objects.enums.organoid.value
- $ref: objects.enums.technical_sample.value
sampling_frequency:
name: sampling_frequency
display_name: Channel sampling frequency
description: |
Sampling rate of the channel in Hz.
type: number
unit: Hz
session_id:
name: session_id
display_name: Session ID
description: |
A session identifier of the form `ses-<label>`,
matching a session found in the dataset.
type: string
pattern: ^ses-[0-9a-zA-Z+]+$
sex:
name: sex
display_name: Sex
description: |
String value indicating phenotypical sex, one of "male", "female", "other".
For "male", use one of these values: `male`, `m`, `M`, `MALE`, `Male`.
For "female", use one of these values: `female`, `f`, `F`, `FEMALE`, `Female`.
For "other", use one of these values: `other`, `o`, `O`, `OTHER`, `Other`.
definition: {
"LongName": "sex",
"Description": "String value indicating phenotypical sex.",
"Format": "string",
"Levels": {
"F": "Female",
"FEMALE": "Female",
"Female": "Female",
"f": "Female",
"female": "Female",
"M": "Male",
"MALE": "Male",
"Male": "Male",
"m": "Male",
"male": "Male",
"O": "Other",
"OTHER": "Other",
"Other": "Other",
"o": "Other",
"other": "Other",
}
}
short_channel:
name: short_channel
display_name: Short Channel
description: |
Is the channel designated as short.
The total number of channels listed as short channels
SHOULD be stored in `ShortChannelCount` in `*_nirs.json`.
type: boolean
signal_electrode:
name: signal_electrode
display_name: Signal electrode
description: |
The name of the electrode from which the `reference`'s signal is subtracted to yield the channel's data.
For channels originating from bipolar devices, the `signal_electrode` MAY be the same as the channel `name`.
type: string
size:
name: size
display_name: Electrode size
description: |
Surface area of the electrode, units MUST be in `mm^2`.
type: number
unit: 'mm^2'
software_filters:
name: software_filters
display_name: Software filters
description: |
List of temporal and/or spatial software filters applied
(for example, `SSS`, `SpatialCompensation`).
Note that parameters should be defined in the general MEG sidecar .json file.
Indicate `n/a` in the absence of software filters applied.
type: string
source__channels:
name: source
display_name: Source name
description: |
Name of the source as specified in the `*_optodes.tsv` file.
`n/a` for channels that do not contain fNIRS signals (for example, acceleration).
type: string
source__optodes:
name: source_type
display_name: Source type
description: |
The type of source. Only to be used if the field `SourceType` in `*_nirs.json` is set to `mixed`.
type: string
species:
name: species
display_name: Species
description: |
The `species` column SHOULD be a binomial species name from the
[NCBI Taxonomy](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi)
(for example, `homo sapiens`, `mus musculus`, `rattus norvegicus`).
For backwards compatibility, if `species` is absent, the participant is assumed to be
`homo sapiens`.
definition: {
"Description":
"Latin binomial species name from the NCBI Taxonomy (https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi).",
"Format": "string",
}
status:
name: status
display_name: Channel status
description: |
Data quality observed on the channel.
A channel is considered `bad` if its data quality is compromised by excessive noise.
If quality is unknown, then a value of `n/a` may be used.
Description of noise type SHOULD be provided in `[status_description]`.
type: string
enum:
- $ref: objects.enums.good.value
- $ref: objects.enums.bad.value
status_description:
name: status_description
display_name: Channel status description
description: |
Freeform text description of noise or artifact affecting data quality on the channel.
It is meant to explain why the channel was declared bad in the `status` column.
type: string
stim_file:
name: stim_file
display_name: Stimulus file
description: |
Represents the location of the stimulus file (such as an image, video, or
audio file) presented at the given onset time.
There are no restrictions on the file formats of the stimuli files,
but they should be stored in the `/stimuli/` directory
(under the root directory of the dataset; with optional subdirectories).
The values under the `stim_file` column correspond to a path relative to
`/stimuli`.
For example `images/cat03.jpg` will be translated to `/stimuli/images/cat03.jpg`.
type: string
format: stimuli_relative
strain:
name: strain
display_name: Strain
description: |
For species different from `homo sapiens`, string value indicating
the strain of the species, for example: `C57BL/6J`.
definition: {
"Description": "Name of the strain of the species.",
"Format": "string",
}
strain_rrid:
name: strain_rrid
display_name: Strain RRID
description: |
For species different from `homo sapiens`, research resource identifier
([RRID](https://rrid.site/data/source/nlx_154697-1/search))
of the strain of the species, for example: `RRID:IMSR_JAX:000664`.
type: string
format: rrid
target_muscle:
name: target_muscle
display_name: Target muscle
description: |
Name of the muscle(s) from which the EMG signal in this channel is believed to originate.
When exact muscle is unknown (such as when using electrode grids that cover multiple muscles),
groups of muscles may be named instead (for example "flexors of the left forearm").
type: string
time:
name: time
display_name: Time
description: |
Time, in seconds, relative to `TimeZero` defined by the `*_pet.json`.
For example, 5.
type: number
unit: s
tracked_point__channels:
name: tracked_point
display_name: Tracked point channel
description: |
Label of the point that is being tracked, for example, label of a tracker
or a marker (for example,`"LeftFoot"`, `"RightWrist"`).
type: string
trial_type:
name: trial_type
display_name: Trial type
description: |
Primary categorisation of each trial to identify them as instances of the
experimental conditions.
For example: for a response inhibition task, it could take on values `go` and
`no-go` to refer to response initiation and response inhibition experimental
conditions.
type: string
trigger:
name: trigger
display_name: Trigger
description: |
continuous measurement of the scanner trigger signal
definition: {
"Description": "continuous measurement of the scanner trigger signal",
"Format": "number",
"Units": "arbitrary"
}
# type column in channels.tsv files
type__channels:
name: type
display_name: Channel type
description: |
Type of channel; MUST use the channel types listed below.
Note that the type MUST be in upper-case.
type: string
enum:
- $ref: objects.enums.ACCEL.value
- $ref: objects.enums.ADC.value
- $ref: objects.enums.ANGACCEL.value
- $ref: objects.enums.AUDIO.value
- $ref: objects.enums.DAC.value
- $ref: objects.enums.DBS.value
- $ref: objects.enums.ECG.value
- $ref: objects.enums.ECOG.value
- $ref: objects.enums.EEG.value
- $ref: objects.enums.EMG.value
- $ref: objects.enums.EOG.value
- $ref: objects.enums.EYEGAZE.value
- $ref: objects.enums.FITERR.value
- $ref: objects.enums.GSR.value
- $ref: objects.enums.GYRO.value
- $ref: objects.enums.HEOG.value
- $ref: objects.enums.HLU.value
- $ref: objects.enums.JNTANG.value
- $ref: objects.enums.LATENCY.value
- $ref: objects.enums.MAGN.value
- $ref: objects.enums.MEGGRADAXIAL.value
- $ref: objects.enums.MEGGRADPLANAR.value
- $ref: objects.enums.MEGMAG.value
- $ref: objects.enums.MEGOTHER.value
- $ref: objects.enums.MEGREFGRADAXIAL.value
- $ref: objects.enums.MEGREFGRADPLANAR.value
- $ref: objects.enums.MEGREFMAG.value
- $ref: objects.enums.MISC.value
- $ref: objects.enums.NIRSCWAMPLITUDE.value
- $ref: objects.enums.NIRSCWFLUORESCENSEAMPLITUDE.value
- $ref: objects.enums.NIRSCWHBO.value
- $ref: objects.enums.NIRSCWHBR.value
- $ref: objects.enums.NIRSCWMUA.value
- $ref: objects.enums.NIRSCWOPTICALDENSITY.value
- $ref: objects.enums.ORNT.value
- $ref: objects.enums.OTHER.value
- $ref: objects.enums.PD.value
- $ref: objects.enums.POS.value
- $ref: objects.enums.PPG.value
- $ref: objects.enums.PUPIL.value
- $ref: objects.enums.REF.value
- $ref: objects.enums.RESP.value
- $ref: objects.enums.SEEG.value
- $ref: objects.enums.SYSCLOCK.value
- $ref: objects.enums.TEMP.value
- $ref: objects.enums.TRIG.value
- $ref: objects.enums.VEL.value
- $ref: objects.enums.VEOG.value
# type column for electrodes.tsv files
type__electrodes:
name: type
display_name: Electrode type
description: |
Type of the electrode (for example, cup, ring, clip-on, wire, needle).
type: string
type__optodes:
name: type
display_name: Type
description: |
The type of the optode.
type: string
enum:
- $ref: objects.enums.source.value
- $ref: objects.enums.detector.value
units:
name: units
display_name: Units
description: |
Physical unit of the value represented in this channel,
for example, `V` for Volt, or `fT/cm` for femto Tesla per centimeter
(see [Units](SPEC_ROOT/common-principles.md#units)).
type: string
format: unit
units__nirs:
name: units
display_name: Units
description: |
Physical unit of the value represented in this channel,
specified according to the SI unit symbol and possibly prefix symbol,
or as a derived SI unit (for example, `V`, or unitless for changes in optical densities).
For guidelines about units see the [Appendix](SPEC_ROOT/appendices/units.md)
and [Common Principles](SPEC_ROOT/common-principles.md#units) pages.
type: string
format: unit
units__motion:
name: units
display_name: Units
description: |
Physical or virtual unit of the value represented in this channel,
for example, '"rad"' or '"deg"' for angular quantities or '"m"' for position data.
If motion data is recorded in a virtual space and deviate from standard SI units,
the unit used MUST be specified in the sidecar `*_motion.json`
file (for example `"vm"` for virtual meters). `"rad"` is used for Euler angles
and `"n/a"` for quaternions.
For guidelines about units see the [Appendix](SPEC_ROOT/appendices/units.md)
and [Common Principles](SPEC_ROOT/common-principles.md#units) pages.
type: string
format: unit
volume_type:
name: volume_type
display_name: ASL volume type
description: |
The `*_aslcontext.tsv` table consists of a single column of labels identifying
the `volume_type` of each volume in the corresponding `*_asl.nii[.gz]` file.
type: string
enum:
- $ref: objects.enums.control.value
- $ref: objects.enums.label.value
- $ref: objects.enums.m0scan.value
- $ref: objects.enums.deltam.value
- $ref: objects.enums.cbf.value
- $ref: objects.enums.noRF.value
wavelength_nominal:
name: wavelength_nominal
display_name: Wavelength nominal
description: |
Specified wavelength of light in nm.
`n/a` for channels that do not contain raw NIRS signals (for example, acceleration).
This field is equivalent to `/nirs(i)/probe/wavelengths` in the SNIRF specification.
type: number
wavelength_actual:
name: wavelength_actual
display_name: Wavelength actual
description: |
Measured wavelength of light in nm.
`n/a` for channels that do not contain raw NIRS signals (acceleration).
This field is equivalent to `measurementList.wavelengthActual` in the SNIRF specification.
type: number
wavelength_emission_actual:
name: wavelength_emission_actual
display_name: Wavelength emission actual
description: |
Measured emission wavelength of light in nm.
`n/a` for channels that do not contain raw NIRS signals (acceleration).
This field is equivalent to `measurementList.wavelengthEmissionActual` in the SNIRF specification.
type: number
whole_blood_radioactivity:
name: whole_blood_radioactivity
display_name: Whole blood radioactivity
description: |
Radioactivity in whole blood samples,
in unit of radioactivity measurements in whole blood samples (for example, `kBq/mL`).
type: number
x:
name: x
display_name: X position
description: |
Recorded position along the x-axis.
type: number
y:
name: y
display_name: Y position
description: |
Recorded position along the y-axis.
type: number
z:
name: z
display_name: Z position
description: |
Recorded position along the z-axis.
type: number
x__optodes:
name: x
display_name: X position
description: |
Recorded position along the x-axis.
`"n/a"` if not available.
type: number
y__optodes:
name: y
display_name: Y position
description: |
Recorded position along the y-axis.
`"n/a"` if not available.
type: number
z__optodes:
name: z
display_name: Z position
description: |