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metadata.yaml
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4705 lines (4701 loc) · 156 KB
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---
# This file defines valid BIDS metadata fields.
# These definitions include the field names, their descriptions, and valid values.
# This file **does not** define how and when metadata fields can be used with a given file.
ACCELChannelCount:
name: ACCELChannelCount
display_name: Acceleration channel count
description: |
Number of acceleration channels.
type: integer
minimum: 0
AnchorCoordinates:
name: AnchorCoordinates
display_name: Anchor Coordinates
description: |
Coordinates of the `AnchorElectrode` in the parent (anatomical) coordinate system.
This should be an array of numbers of length 3, in the units given in
`EMGCoordinateSystemUnits` within the JSON object named in `ParentCoordinateSystem`.
type: array
minItems: 1
maxItems: 3
items:
type: number
AnchorElectrode:
name: AnchorElectrode
display_name: Anchor Electrode
description: |
Name of the electrode in the child (device) coordinate system whose coordinates in
the parent (anatomical) coordinate system are given in `AnchorCoordinates`.
type: string
Acknowledgements:
name: Acknowledgements
display_name: Acknowledgements
description: |
Text acknowledging contributions of individuals or institutions beyond
those listed in Authors or Funding.
type: string
AcquisitionDuration:
name: AcquisitionDuration
display_name: Acquisition Duration
description: |
Duration (in seconds) of scan acquisition, including all volumes for multi-volume scans.
Corresponds to [DICOM Tag 0018, 9073](http://www.dicomlookup.com/dicomtags/(0018,9073))
`Acquisition Duration`.
type: number
exclusiveMinimum: 0
unit: s
AcquisitionMode:
name: AcquisitionMode
display_name: Acquisition Mode
description: |
Type of acquisition of the PET data (for example, `"list mode"`).
type: string
AcquisitionVoxelSize:
name: AcquisitionVoxelSize
display_name: Acquisition Voxel Size
description: |
An array of numbers with a length of 3, in millimeters.
This field denotes the original acquisition voxel size,
excluding any inter-slice gaps and before any interpolation or resampling
within reconstruction or image processing.
Any point spread function effects, for example due to T2-blurring,
that would decrease the effective resolution are not considered here.
type: array
minItems: 3
maxItems: 3
items:
type: number
exclusiveMinimum: 0
unit: mm
Anaesthesia:
name: Anaesthesia
display_name: Anaesthesia
description: |
Details of anaesthesia used, if any.
type: string
AnalyticalApproach:
name: AnalyticalApproach
display_name: Analytical Approach
description: |
Methodology or methodologies used to analyze the `"GeneticLevel"`.
Values MUST be taken from the
[database of Genotypes and Phenotypes
(dbGaP)](https://www.ncbi.nlm.nih.gov/gap/advanced)
under /Study/Molecular Data Type (for example, SNP Genotypes (Array) or
Methylation (CpG).
anyOf:
- type: string
- type: array
items:
type: string
AnatomicalImage:
name: AnatomicalImage
display_name: Anatomical Image
description: |
The path(s) to the anatomical MR image file(s), if present,
to which the associated MRS data file corresponds.
Contains one or more [BIDS URIs](SPEC_ROOT/common-principles.md#bids-uri).
anyOf:
- type: string
format: bids_uri
- type: array
items:
type: string
format: bids_uri
AnatomicalLandmarkCoordinateSystem:
name: AnatomicalLandmarkCoordinateSystem
display_name: Anatomical Landmark Coordinate System
description: |
Defines the coordinate system for the anatomical landmarks.
See the [Coordinate Systems Appendix](SPEC_ROOT/appendices/coordinate-systems.md)
for a list of restricted keywords for coordinate systems.
If `"Other"`, provide definition of the coordinate system in
`"AnatomicalLandmarkCoordinateSystemDescription"`.
anyOf:
- $ref: objects.enums._MEGCoordSys
- $ref: objects.enums._EEGCoordSys
- $ref: objects.enums._StandardTemplateCoordSys
- $ref: objects.enums._StandardTemplateDeprecatedCoordSys
AnatomicalLandmarkCoordinateSystemDescription:
name: AnatomicalLandmarkCoordinateSystemDescription
display_name: Anatomical Landmark Coordinate System Description
description: |
Free-form text description of the coordinate system.
May also include a link to a documentation page or paper describing the
system in greater detail.
type: string
AnatomicalLandmarkCoordinateUnits:
name: AnatomicalLandmarkCoordinateUnits
display_name: Anatomical Landmark Coordinate Units
description: |
Units of the coordinates of `"AnatomicalLandmarkCoordinateSystem"`.
type: string
# TODO: Add definitions for these values. (perhaps don't specify)
enum:
- m
- mm
- cm
- n/a
AnatomicalLandmarkCoordinates:
name: AnatomicalLandmarkCoordinates
display_name: Anatomical Landmark Coordinates
description: |
Key-value pairs of the labels and 3-D digitized locations of anatomical landmarks,
interpreted following the `"AnatomicalLandmarkCoordinateSystem"`
(for example, `{"NAS": [12.7,21.3,13.9], "LPA": [5.2,11.3,9.6],
"RPA": [20.2,11.3,9.1]}`.
Each array MUST contain three numeric values corresponding to x, y, and z
axis of the coordinate system in that exact order.
type: object
additionalProperties:
type: array
items:
type: number
minItems: 3
maxItems: 3
# Redefinition of AnatomicalLandmarkCoordinates for MRI data
AnatomicalLandmarkCoordinates__mri:
name: AnatomicalLandmarkCoordinates
display_name: Anatomical Landmark Coordinates
description: |
Key-value pairs of any number of additional anatomical landmarks and their
coordinates in voxel units (where first voxel has index 0,0,0)
relative to the associated anatomical MRI
(for example, `{"AC": [127,119,149], "PC": [128,93,141],
"IH": [131,114,206]}`, or `{"NAS": [127,213,139], "LPA": [52,113,96],
"RPA": [202,113,91]}`).
Each array MUST contain three numeric values corresponding to x, y, and z
axis of the coordinate system in that exact order.
type: object
additionalProperties:
type: array
items:
type: number
minItems: 3
maxItems: 3
ANGACCELChannelCount:
name: ANGACCELChannelCount
display_name: Angular acceleration channel count
description: |
Number of angular acceleration channels.
type: integer
minimum: 0
ArterialSpinLabelingType:
name: ArterialSpinLabelingType
display_name: Arterial Spin Labeling Type
description: |
The arterial spin labeling type.
type: string
enum:
- $ref: objects.enums.CASL.value
- $ref: objects.enums.PCASL.value
- $ref: objects.enums.PASL.value
AssociatedEmptyRoom:
name: AssociatedEmptyRoom
display_name: Associated Empty Room
description: |
One or more [BIDS URIs](SPEC_ROOT/common-principles.md#bids-uri)
pointing to empty-room file(s) associated with the subject's MEG recording.
Using forward-slash separated paths relative to the dataset root is
[DEPRECATED](SPEC_ROOT/common-principles.md#definitions).
anyOf:
- type: array
items:
anyOf:
- type: string
format: dataset_relative
- type: string
format: bids_uri
- type: string
format: dataset_relative
- type: string
format: bids_uri
AtlasName:
name: Name
display_name: Name
description: |
Name of the atlas.
type: string
AtlasSampleSize:
name: SampleSize
display_name: Atlas' sample size
description: |
Number of items (typically, independent participants;
although it could also refer to, for example, sessions)
that were employed to create the corresponding atlas.
type: number
AttenuationCorrection:
name: AttenuationCorrection
display_name: Attenuation Correction
description: |
Short description of the attenuation correction method used.
type: string
AttenuationCorrectionMethodReference:
name: AttenuationCorrectionMethodReference
display_name: Attenuation Correction Method Reference
description: |
Reference paper for the attenuation correction method used.
type: string
Authors:
name: Authors
display_name: Authors
description: |
List of individuals who contributed to the creation/curation of the dataset.
type: array
items:
type: string
AverageCalibrationError:
name: AverageCalibrationError
display_name: Average Calibration Error
description: |
Average calibration error in degrees of visual angle.
type: number
unit: degree
B0FieldIdentifier:
name: B0FieldIdentifier
display_name: B0 Field Identifier
description: |
The presence of this key states that this particular 3D or 4D image MAY be
used for fieldmap estimation purposes.
Each `"B0FieldIdentifier"` MUST be a unique string within one participant's tree,
shared only by the images meant to be used as inputs for the estimation of a
particular instance of the *B<sub>0</sub> field* estimation.
It is RECOMMENDED to derive this identifier from DICOM Tags, for example,
DICOM tag 0018, 1030 `Protocol Name`, or DICOM tag 0018, 0024 `Sequence Name`
when the former is not defined (for example, in GE devices.)
anyOf:
- type: string
- type: array
items:
type: string
B0FieldSource:
name: B0FieldSource
display_name: B0 Field Source
description: |
At least one existing `"B0FieldIdentifier"` defined by images in the
participant's tree.
This field states the *B<sub>0</sub> field* estimation designated by the
`"B0FieldIdentifier"` that may be used to correct the dataset for distortions
caused by B<sub>0</sub> inhomogeneities.
`"B0FieldSource"` and `"B0FieldIdentifier"` MAY both be present for images that
are used to estimate their own B<sub>0</sub> field, for example, in "pepolar"
acquisitions.
anyOf:
- type: string
- type: array
items:
type: string
B0ShimmingTechnique:
name: B0ShimmingTechnique
display_name: B0 Shimming Technique
description: |
The technique used to shim the *B*<sub>0</sub> field (for example, `"Dynamic shim updating"`
or `"FASTMAP"`).
type: string
B1ShimmingTechnique:
name: B1ShimmingTechnique
display_name: B1 Shimming Technique
description: |
The technique used to shim the *B*<sub>1</sub> field (for example, `"Simple phase align"`
or `"Pre-saturated TurboFLASH"`).
type: string
BIDSVersion:
name: BIDSVersion
display_name: BIDS Version
description: |
The version of the BIDS standard that was used.
type: string
BackgroundSuppression:
name: BackgroundSuppression
display_name: Background Suppression
description: |
Boolean indicating if background suppression is used.
type: boolean
BackgroundSuppressionNumberPulses:
name: BackgroundSuppressionNumberPulses
display_name: Background Suppression Number Pulses
description: |
The number of background suppression pulses used.
Note that this excludes any effect of background suppression pulses applied
before the labeling.
type: number
minimum: 0
BackgroundSuppressionPulseTime:
name: BackgroundSuppressionPulseTime
display_name: Background Suppression Pulse Time
description: |
Array of numbers containing timing, in seconds,
of the background suppression pulses with respect to the start of the
labeling.
In case of multi-PLD with different background suppression pulse times,
only the pulse time of the first PLD should be defined.
type: array
items:
type: number
minimum: 0
unit: s
BasedOn:
name: BasedOn
display_name: Based On
description: |
List of files in a file collection to generate the map.
Fieldmaps are also listed, if involved in the processing.
This field is DEPRECATED, and this metadata SHOULD be recorded in the
`Sources` field using [BIDS URIs](SPEC_ROOT/common-principles.md#bids-uri)
to distinguish sources from different datasets.
anyOf:
- type: string
format: participant_relative
- type: array
items:
type: string
format: participant_relative
BigDelta:
name: BigDelta
display_name: Diffusion Big Delta (Δ)
description: |
In the context of a diffusion-weighted pulsed gradient spin echo sequence,
corresponds to the time between the leading edges of two successive
diffusion-encoding gradient pulses (Δ), specified in seconds.
The value may be an array, if Δ varies by volume, in which case the number
of values MUST correspond to the number of volumes in the data file.
anyOf:
- type: number
unit: s
exclusiveMinimum: 0
- type: array
items:
type: number
unit: s
exclusiveMinimum: 0
BloodDensity:
name: BloodDensity
display_name: Blood Density
description: |
Measured blood density. Unit of blood density should be in `"g/mL"`.
type: number
unit: g/mL
BodyPart:
name: BodyPart
display_name: Body Part
description: |
Body part of the organ / body region scanned.
type: string
BodyPartDetails:
name: BodyPartDetails
display_name: Body Part Details
description: |
Additional details about body part or location (for example: `"corpus callosum"`).
type: string
BodyPartDetailsOntology:
name: BodyPartDetailsOntology
display_name: Body Part Details Ontology
description: |
[URI](SPEC_ROOT/common-principles.md#uniform-resource-indicator) of ontology used for
BodyPartDetails (for example: `"https://www.ebi.ac.uk/ols/ontologies/uberon"`).
type: string
format: uri
BolusCutOffDelayTime:
name: BolusCutOffDelayTime
display_name: Bolus Cut Off Delay Time
description: |
Duration between the end of the labeling and the start of the bolus cut-off
saturation pulse(s), in seconds.
This can be a number or array of numbers, of which the values must be
non-negative and monotonically increasing, depending on the number of bolus
cut-off saturation pulses.
For Q2TIPS, only the values for the first and last bolus cut-off saturation
pulses are provided.
Based on [DICOM Tag 0018, 925F](http://www.dicomlookup.com/dicomtags/(0018,925F))
`ASL Bolus Cut-off Delay Time`.
anyOf:
- type: number
minimum: 0
unit: s
- type: array
items:
type: number
unit: s
minimum: 0
BolusCutOffFlag:
name: BolusCutOffFlag
display_name: Bolus Cut Off Flag
description: |
Boolean indicating if a bolus cut-off technique is used.
Corresponds to [DICOM Tag 0018, 925C](http://www.dicomlookup.com/dicomtags/(0018,925C))
`ASL Bolus Cut-off Flag`.
type: boolean
BolusCutOffTechnique:
name: BolusCutOffTechnique
display_name: Bolus Cut Off Technique
description: |
Name of the technique used, for example `"Q2TIPS"`, `"QUIPSS"`, `"QUIPSSII"`.
Corresponds to [DICOM Tag 0018, 925E](http://www.dicomlookup.com/dicomtags/(0018,925E))
`ASL Bolus Cut-off Technique`.
type: string
BrainLocation:
name: BrainLocation
display_name: Brain Location
description: |
Refers to the location in space of the `"TissueOrigin"`.
Values may be an MNI coordinate,
a label taken from the
[Allen Brain Atlas](https://atlas.brain-map.org/atlas?atlas=265297125&plate=\
112360888&structure=4392&x=40348.15104166667&y=46928.75&zoom=-7&resolution=\
206.60&z=3),
or layer to refer to layer-specific gene expression,
which can also tie up with laminar fMRI.
type: string
CalibrationCount:
name: CalibrationCount
display_name: Calibration Count
description: |
The number of calibrations corresponding to this run.
type: integer
minimum: 0
CalibrationPosition:
name: CalibrationPosition
display_name: Calibration Position
description: |
A list of `[x, y]` coordinates in the `CalibrationUnit`.
For example, using 5 positions calibration presented on an HD screen,
it could be `[[960,50],[960,540],[960,1030],[50,540],[1870,540]]`.
type: array
items:
type: array
minItems: 2
maxItems: 2
items:
type: number
CalibrationType:
name: CalibrationType
display_name: Calibration Type
description: |
The type of the calibration procedure executed last.
For example the `"H3"` for horizontal calibration with 3 positions
or `"HV9"` for horizontal and vertical calibration with 9 positions,
or one point calibration.
type: string
CalibrationUnit:
name: CalibrationUnit
display_name: Calibration Unit
description: |
Unit of `"CalibrationPosition"`.
type: string
enum:
- pixel
- mm
- cm
CASLType:
name: CASLType
display_name: CASL Type
description: |
Describes if a separate coil is used for labeling.
type: string
enum:
- $ref: objects.enums.single_coil.value
- $ref: objects.enums.double_coil.value
CapManufacturer:
name: CapManufacturer
display_name: Cap Manufacturer
description: |
Name of the cap manufacturer (for example, `"EasyCap"`).
type: string
CapManufacturersModelName:
name: CapManufacturersModelName
display_name: Cap Manufacturers Model Name
description: |
Manufacturer's designation of the cap model
(for example, `"actiCAP 64 Ch Standard-2"`).
type: string
CellType:
name: CellType
display_name: Cell Type
description: |
Describes the type of cell analyzed.
Values SHOULD come from the
[cell ontology](https://obofoundry.org/ontology/cl.html).
type: string
ChemicalShiftOffset:
name: ChemicalShiftOffset
display_name: Chemical Shift Offset
description: |
The chemical shift at the center of `SpectralWidth` corresponding to 0 Hz,
specified in ppm (for example, `4.65`).
type: number
unit: ppm
ChemicalShiftReference:
name: ChemicalShiftReference
display_name: Chemical Shift Reference
description: |
The chemical shift at the transmitter frequency, specified in ppm (for example, `2.68`).
Corresponds to [DICOM Tag 0018, 9053](http://www.dicomlookup.com/dicomtags/(0018,9053))
`Chemical Shift Reference`.
type: number
unit: ppm
ChunkTransformationMatrix:
name: ChunkTransformationMatrix
display_name: Chunk Transformation Matrix
description: |
3x3 or 4x4 affine transformation matrix describing spatial chunk transformation,
for 2D and 3D respectively (for examples: `[[2, 0, 0], [0, 3, 0], [0, 0, 1]]`
in 2D for 2x and 3x scaling along the first and second axis respectively; or
`[[1, 0, 0, 0], [0, 2, 0, 0], [0, 0, 3, 0], [0, 0, 0, 1]]` in 3D for 2x and 3x
scaling along the second and third axis respectively).
Note that non-spatial dimensions like time and channel are not included in the
transformation matrix.
anyOf:
- type: array
minItems: 3
maxItems: 3
items:
type: array
minItems: 3
maxItems: 3
items:
type: number
- type: array
minItems: 4
maxItems: 4
items:
type: array
minItems: 4
maxItems: 4
items:
type: number
ChunkTransformationMatrixAxis:
name: ChunkTransformationMatrixAxis
display_name: Chunk Transformation Matrix Axis
description: |
Describe the axis of the ChunkTransformationMatrix
(for examples: `["X", "Y"]` or `["Z", "Y", "X"]`).
type: array
minItems: 2
maxItems: 3
items:
type: string
Code:
name: Code
display_name: Code
description: |
[URI](SPEC_ROOT/common-principles.md#uniform-resource-indicator)
of the code used to present the stimuli.
Persistent identifiers such as DOIs are preferred.
If multiple versions of code may be hosted at the same location,
revision-specific URIs are recommended.
type: string
format: uri
CodeValue:
name: CodeValue
display_name: Code Value
description: |
An identifier that is unambiguous within the Coding Scheme
denoted by Coding Scheme Designator and Coding Scheme Version.
Corresponds to [DICOM Tag 0008, 0100](http://www.dicomlookup.com/dicomtags/(0008,0100))
`Code Value`.
type: string
CodeMeaning:
name: CodeMeaning
display_name: Code Meaning
description: |
Text that has meaning to a human and conveys the meaning of the term
Corresponds to [DICOM Tag 0008, 0104](http://www.dicomlookup.com/dicomtags/(0008,0104))
`Code Meaning`.
type: string
CodingSchemeDesignator:
name: CodingSchemeDesignator
display_name: Coding Scheme Designator
description: |
The identifier of the coding scheme in which the coded entry is defined.
Corresponds to [DICOM Tag 0008, 0102](http://www.dicomlookup.com/dicomtags/(0008,0102))
`Coding Scheme Designator`.
type: string
CodingSchemeVersion:
name: CodingSchemeVersion
display_name: Coding Scheme version
description: |
An identifier of the version of the coding scheme if necessary to resolve ambiguity.
Corresponds to [DICOM Tag 0008, 0103](http://www.dicomlookup.com/dicomtags/(0008,0103))
`Coding Scheme Version`.
type: string
CodeURL:
name: CodeURL
display_name: Code URL
description: URL where the code used to generate the dataset may be found.
type: string
format: uri
CogAtlasID:
name: CogAtlasID
display_name: Cognitive Atlas ID
description: |
[URI](SPEC_ROOT/common-principles.md#uniform-resource-indicator)
of the corresponding [Cognitive Atlas](https://www.cognitiveatlas.org/)
Task term.
type: string
format: uri
CogPOID:
name: CogPOID
display_name: Cognitive Paradigm Ontology ID
description: |
[URI](SPEC_ROOT/common-principles.md#uniform-resource-indicator)
of the corresponding [CogPO](http://www.cogpo.org/) term.
type: string
format: uri
CoilCombinationMethod:
name: CoilCombinationMethod
display_name: Coil Combination Method
description: |
Almost all fMRI studies using phased-array coils use root-sum-of-squares
(rSOS) combination, but other methods exist.
The image reconstruction is changed by the coil combination method
(as for the matrix coil mode above),
so anything non-standard should be reported.
type: string
Columns:
name: Columns
display_name: Columns
description: |
Names of columns in file.
type: array
items:
type: string
Container:
name: Container
display_name: Container
description: |
Used to specify the location and relevant attributes of software container image
used to produce the dataset. Valid keys in this object include `Type`, `Tag` and
[`URI`][uri] with [string][] values.
type: object
recommended:
- Type
- Tag
- URI
properties:
ContainerType:
$ref: objects.metadata.ContainerType
ContainerTag:
$ref: objects.metadata.ContainerTag
ContainerURI:
$ref: objects.metadata.ContainerURI
ContainerTag:
name: ContainerTag
display_name: Container Tag
description: |
Tag of software container image used to produce the dataset
type: string
ContainerType:
name: ContainerType
display_name: Container Type
description: |
Type of software container image used to produce the dataset
type: string
ContainerURI:
name: ContainerURI
display_name: Container URI
description: |
URI for software container image used to produce the dataset
type: string
format: uri
ContinuousHeadLocalization:
name: ContinuousHeadLocalization
display_name: Continuous Head Localization
description: |
`true` or `false` value indicating whether continuous head localization
was performed.
type: boolean
ContrastBolusIngredient:
name: ContrastBolusIngredient
display_name: Contrast Bolus Ingredient
description: |
Active ingredient of agent.
Corresponds to [DICOM Tag 0018, 1048](http://www.dicomlookup.com/dicomtags/(0018,1048))
`Contrast/Bolus Ingredient`.
type: string
enum:
- $ref: objects.enums.IODINE.value
- $ref: objects.enums.GADOLINIUM.value
- $ref: objects.enums.CARBON_DIOXIDE.value
- $ref: objects.enums.BARIUM.value
- $ref: objects.enums.XENON.value
# TODO: Add definitions for these values. (perhaps don't specify)
- UNKNOWN
- NONE
CoordinateReportStrategy:
name: CoordinateReportStrategy
display_name: CoordinateReportStrategy
description: |
Indicate the method of coordinate reporting in statistically significant clusters.
Could be the "peak" statistical coordinate in the cluster or the
"center_of_mass" of the cluster.
enum:
- peak
- center_of_mass
- other
type: string
Curators:
name: Curators
display_name: Curators
description: |
List of curators who helped make the atlas accessible in a database or dataset.
type: array
items:
type: string
DCOffsetCorrection:
name: DCOffsetCorrection
display_name: DC Offset Correction
description: |
A description of the method (if any) used to correct for a DC offset.
If the method used was subtracting the mean value for each channel,
use "mean".
type: string
Database:
name: Database
display_name: Database
description: |
[URI](SPEC_ROOT/common-principles.md#uniform-resource-indicator)
of database where the dataset is hosted.
type: string
format: uri
Dataset:
name: Dataset
display_name: Dataset
description: |
[URI](SPEC_ROOT/common-principles.md#uniform-resource-indicator)
where data can be retrieved.
type: string
format: uri
DatasetDOI:
name: DatasetDOI
display_name: DatasetDOI
description: |
The Digital Object Identifier of the dataset (not the corresponding paper).
DOIs SHOULD be expressed as a valid
[URI](SPEC_ROOT/common-principles.md#uniform-resource-indicator);
bare DOIs such as `10.0.2.3/dfjj.10` are
[DEPRECATED](SPEC_ROOT/common-principles.md#definitions).
type: string
format: uri
DatasetLinks:
name: DatasetLinks
display_name: Dataset Links
description: |
Used to map a given `<dataset-name>` from a [BIDS URI](SPEC_ROOT/common-principles.md#bids-uri)
of the form `bids:<dataset-name>:path/within/dataset` to a local or remote location.
The `<dataset-name>`: `""` (an empty string) is a reserved keyword that MUST NOT be a key in
`DatasetLinks` (example: `bids::path/within/dataset`).
type: object
additionalProperties:
type: string
format: uri
DatasetType:
name: DatasetType
display_name: Dataset Type
description: |
The interpretation of the dataset.
For backwards compatibility, the default value is `"raw"`.
type: string
enum:
- $ref: objects.enums.raw.value
- $ref: objects.enums.derivative.value
- $ref: objects.enums.study__datasettype.value
DecayCorrectionFactor:
name: DecayCorrectionFactor
display_name: Decay Correction Factor
description: |
Decay correction factor for each frame.
type: array
items:
type: number
DeidentificationMethod:
name: DeidentificationMethod
display_name: Deidentification Method
description: |
A description of the mechanism or method used to remove the Patient's identity.
Corresponds to [DICOM Tag 0012, 0063](http://www.dicomlookup.com/dicomtags/(0012,0063))
`De-identification Method`.
type: array
items:
type: string
DeidentificationMethodCodeSequence:
name: DeidentificationMethodCodeSequence
display_name: Deidentification Method Code Sequence
description: |
A sequence of code objects describing the mechanism or method use to remove the Patient's identity.
Corresponds to [DICOM Tag 0012, 0064](http://www.dicomlookup.com/dicomtags/(0012,0064))
`De-identification Method Code Sequence`.
type: array
items:
type: object
recommended:
- CodeValue
- CodeMeaning
- CodingSchemeDesignator
- CodingSchemeVersion
properties:
CodeValue:
$ref: objects.metadata.CodeValue
CodeMeaning:
$ref: objects.metadata.CodeMeaning
CodingSchemeDesignator:
$ref: objects.metadata.CodingSchemeDesignator
CodingSchemeVersion:
$ref: objects.metadata.CodingSchemeVersion
DelayAfterTrigger:
name: DelayAfterTrigger
display_name: Delay After Trigger
description: |
Duration (in seconds) from trigger delivery to scan onset.
This delay is commonly caused by adjustments and loading times.
This specification is entirely independent of
`"NumberOfVolumesDiscardedByScanner"` or `"NumberOfVolumesDiscardedByUser"`,
as the delay precedes the acquisition.
type: number
unit: s
DelayTime:
name: DelayTime
display_name: Delay Time
description: |
User specified time (in seconds) to delay the acquisition of data for the
following volume.
If the field is not present it is assumed to be set to zero.
Corresponds to Siemens CSA header field `lDelayTimeInTR`.
This field is REQUIRED for sparse sequences using the `"RepetitionTime"` field
that do not have the `"SliceTiming"` field set to allowed for accurate
calculation of "acquisition time".
This field is mutually exclusive with `"VolumeTiming"`.
type: number
unit: s
Delimiter:
name: Delimiter
display_name: Delimiter
description: |
If rows in a column may be interpreted as a lists of values, the character that
separates one value from the next.
type: string
Density:
name: Density
display_name: Density
description: |
Specifies the interpretation of the density keyword.
If an object is used, then the keys should be values for the `den` entity
and values should be descriptions of those `den` values.
anyOf:
- type: string
- type: object
additionalProperties:
type: string
Derivative:
name: Derivative
display_name: Derivative
description: |
Indicates that values in the corresponding column are transformations of values
from other columns (for example a summary score based on a subset of items in a
questionnaire).
type: boolean
DerivedFrom:
name: DerivedFrom
display_name: DerivedFrom
description: |
Indicate what data modality the atlas was derived from; for example, "cytoarchitecture", "resting-state", or "task".
type: string
Description:
name: Description
display_name: Description
description: |
Free-form natural language description.
type: string
Description__GeneratedBy:
name: Description
display_name: Pipeline Description
description: |
Plain-text description of the pipeline or process that generated the outputs.
RECOMMENDED if `Name` is `"Manual"`.
type: string
DetectorType:
name: DetectorType
display_name: Detector Type
description: |
Type of detector. This is a free form description with the following suggested terms:
`"SiPD"`, `"APD"`. Preferably a specific model/part number is supplied.
If individual channels have different `DetectorType`,
then the field here should be specified as `"mixed"`
and this column should be included in `optodes.tsv`.
anyOf:
- type: string
format: unit
- type: string
enum:
- $ref: objects.enums.mixed.value
Descriptors:
name: Descriptors
display_name: Descriptors
description: |
List of relevant descriptors (for example, journal articles) for dataset
using a valid
[URI](SPEC_ROOT/common-principles.md#uniform-resource-indicator)
when possible.
anyOf:
- type: string
- type: array
items:
type: string
DeviceSerialNumber:
name: DeviceSerialNumber
display_name: Device Serial Number
description: |
The serial number of the equipment that produced the measurements.
A pseudonym can also be used to prevent the equipment from being
identifiable, so long as each pseudonym is unique within the dataset.
type: string
DewarPosition:
name: DewarPosition
display_name: Dewar Position
description: |
Position of the dewar during the MEG scan:
`"upright"`, `"supine"` or `"degrees"` of angle from vertical:
for example on CTF systems, `"upright=15°, supine=90°"`.
type: string
DiffGradientDuration:
name: DiffGradientDuration
display_name: Diffusion Gradient Duration
description: |
In the context of a diffusion-weighted pulsed gradient spin echo sequence,
corresponds to the duration of a diffusion-encoding gradient pulse (δ),
specified in milliseconds.
anyOf:
- type: number
unit: ms
exclusiveMinimum: 0
- type: array
items:
type: number
unit: ms
exclusiveMinimum: 0
DiffGradientSeparation:
name: DiffGradientSeparation
display_name: Diffusion Gradient Separation
description: |
In the context of a diffusion-weighted pulsed gradient spin echo sequence,
corresponds to the time between the leading edges of two successive
diffusion-encoding gradient pulses (Δ), specified in milliseconds.
anyOf:
- type: number
unit: ms
exclusiveMinimum: 0
- type: array
items:
type: number
unit: ms
exclusiveMinimum: 0
DigitizedHeadPoints:
name: DigitizedHeadPoints
display_name: Digitized Head Points
description: |
`true` or `false` value indicating whether head points outlining the
scalp/face surface are contained within this recording.
type: boolean
DigitizedHeadPoints__coordsystem:
name: DigitizedHeadPoints