CI tests

Some changes to input format and cleaned up popt structure #86

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Run time

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Job	Run time
bundled (3.8)	1m 4s
bundled (3.10)	1m 4s
bundled (3.9)	1m 6s
bundled (3.11)	1m 5s
bundled (3.10)	1m 1s
bundled (3.8)	1m 11s
bundled (3.9)	1m 6s
bundled (3.11)	1m 11s
	8m 48s